| Full name: solute carrier family 52 member 3 | Alias Symbol: bA371L19.1|hRFT2|RFVT3 | ||
| Type: protein-coding gene | Cytoband: 20p13 | ||
| Entrez ID: 113278 | HGNC ID: HGNC:16187 | Ensembl Gene: ENSG00000101276 | OMIM ID: 613350 |
| Drug and gene relationship at DGIdb | |||
Expression of SLC52A3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SLC52A3 | 113278 | 233451_at | -0.1071 | 0.6194 | |
| GSE26886 | SLC52A3 | 113278 | 233451_at | -0.1408 | 0.2628 | |
| GSE45670 | SLC52A3 | 113278 | 228236_at | 1.2843 | 0.0000 | |
| GSE53622 | SLC52A3 | 113278 | 107692 | 0.1698 | 0.4324 | |
| GSE53624 | SLC52A3 | 113278 | 107692 | 0.2490 | 0.1628 | |
| GSE63941 | SLC52A3 | 113278 | 233451_at | 0.3108 | 0.0526 | |
| GSE77861 | SLC52A3 | 113278 | 233451_at | -0.1858 | 0.1790 | |
| SRP007169 | SLC52A3 | 113278 | RNAseq | 0.0678 | 0.8916 | |
| SRP064894 | SLC52A3 | 113278 | RNAseq | 0.9259 | 0.0208 | |
| SRP133303 | SLC52A3 | 113278 | RNAseq | 0.6416 | 0.0102 | |
| SRP159526 | SLC52A3 | 113278 | RNAseq | 0.3618 | 0.5240 | |
| SRP193095 | SLC52A3 | 113278 | RNAseq | 0.1347 | 0.5864 | |
| SRP219564 | SLC52A3 | 113278 | RNAseq | 0.3195 | 0.5664 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by SLC52A3 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SLC52A3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SLC52A3 | 113278 | 12 | 4 | 14 | |
| GSE20123 | SLC52A3 | 113278 | 13 | 4 | 13 | |
| GSE43470 | SLC52A3 | 113278 | 12 | 1 | 30 | |
| GSE46452 | SLC52A3 | 113278 | 26 | 1 | 32 | |
| GSE47630 | SLC52A3 | 113278 | 19 | 4 | 17 | |
| GSE54993 | SLC52A3 | 113278 | 2 | 15 | 53 | |
| GSE54994 | SLC52A3 | 113278 | 25 | 2 | 26 | |
| GSE60625 | SLC52A3 | 113278 | 0 | 0 | 11 | |
| GSE74703 | SLC52A3 | 113278 | 11 | 1 | 24 | |
| GSE74704 | SLC52A3 | 113278 | 8 | 2 | 10 | |
| TCGA | SLC52A3 | 113278 | 41 | 11 | 44 |
Total number of gains: 169; Total number of losses: 45; Total Number of normals: 274.
Somatic mutations of SLC52A3:
Generating mutation plots.
Highly correlated genes for SLC52A3:
Showing top 20/116 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SLC52A3 | PLEKHG6 | 0.726812 | 3 | 0 | 3 |
| SLC52A3 | UPK2 | 0.700697 | 3 | 0 | 3 |
| SLC52A3 | C2orf16 | 0.692739 | 4 | 0 | 4 |
| SLC52A3 | ADCY1 | 0.673073 | 3 | 0 | 3 |
| SLC52A3 | RARG | 0.664254 | 4 | 0 | 4 |
| SLC52A3 | SAMD10 | 0.653517 | 3 | 0 | 3 |
| SLC52A3 | TSSK2 | 0.650016 | 4 | 0 | 3 |
| SLC52A3 | NDOR1 | 0.646769 | 4 | 0 | 4 |
| SLC52A3 | TPRN | 0.64157 | 3 | 0 | 3 |
| SLC52A3 | BARHL1 | 0.637742 | 3 | 0 | 3 |
| SLC52A3 | MVK | 0.636334 | 4 | 0 | 3 |
| SLC52A3 | ANGPT4 | 0.62516 | 3 | 0 | 3 |
| SLC52A3 | MTUS2-AS1 | 0.619878 | 3 | 0 | 3 |
| SLC52A3 | ENHO | 0.618404 | 3 | 0 | 3 |
| SLC52A3 | TEKT5 | 0.614768 | 3 | 0 | 3 |
| SLC52A3 | SPACA4 | 0.607627 | 4 | 0 | 3 |
| SLC52A3 | AIPL1 | 0.607371 | 3 | 0 | 3 |
| SLC52A3 | ZNF295-AS1 | 0.607019 | 4 | 0 | 3 |
| SLC52A3 | SLC22A14 | 0.606052 | 4 | 0 | 4 |
| SLC52A3 | PRR35 | 0.605242 | 4 | 0 | 3 |
For details and further investigation, click here
