| Full name: small integral membrane protein 13 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 6p24.2 | ||
| Entrez ID: 221710 | HGNC ID: HGNC:27356 | Ensembl Gene: ENSG00000224531 | OMIM ID: |
Expression of SMIM13:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SMIM13 | 221710 | 227124_at | 0.6570 | 0.1156 | |
| GSE26886 | SMIM13 | 221710 | 227124_at | 0.6574 | 0.0260 | |
| GSE45670 | SMIM13 | 221710 | 227124_at | 0.1670 | 0.4699 | |
| GSE53622 | SMIM13 | 221710 | 103998 | 0.4866 | 0.0000 | |
| GSE53624 | SMIM13 | 221710 | 103998 | 0.7381 | 0.0000 | |
| GSE63941 | SMIM13 | 221710 | 227124_at | -0.9699 | 0.2572 | |
| GSE77861 | SMIM13 | 221710 | 227124_at | 0.6028 | 0.0369 | |
| SRP007169 | SMIM13 | 221710 | RNAseq | 0.6040 | 0.0988 | |
| SRP008496 | SMIM13 | 221710 | RNAseq | 0.7861 | 0.0006 | |
| SRP064894 | SMIM13 | 221710 | RNAseq | 0.5122 | 0.0047 | |
| SRP133303 | SMIM13 | 221710 | RNAseq | 0.7932 | 0.0003 | |
| SRP159526 | SMIM13 | 221710 | RNAseq | 1.0155 | 0.0007 | |
| SRP193095 | SMIM13 | 221710 | RNAseq | 0.4621 | 0.0002 | |
| SRP219564 | SMIM13 | 221710 | RNAseq | 0.4771 | 0.1076 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by SMIM13 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SMIM13:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SMIM13 | 221710 | 4 | 7 | 19 | |
| GSE20123 | SMIM13 | 221710 | 4 | 7 | 19 | |
| GSE43470 | SMIM13 | 221710 | 9 | 2 | 32 | |
| GSE46452 | SMIM13 | 221710 | 1 | 10 | 48 | |
| GSE47630 | SMIM13 | 221710 | 7 | 8 | 25 | |
| GSE54993 | SMIM13 | 221710 | 1 | 1 | 68 | |
| GSE54994 | SMIM13 | 221710 | 10 | 3 | 40 | |
| GSE60625 | SMIM13 | 221710 | 0 | 1 | 10 | |
| GSE74703 | SMIM13 | 221710 | 8 | 2 | 26 | |
| GSE74704 | SMIM13 | 221710 | 2 | 3 | 15 | |
| TCGA | SMIM13 | 221710 | 15 | 28 | 53 |
Total number of gains: 61; Total number of losses: 72; Total Number of normals: 355.
Somatic mutations of SMIM13:
Generating mutation plots.
Highly correlated genes for SMIM13:
Showing top 20/445 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SMIM13 | ATG101 | 0.675371 | 4 | 0 | 4 |
| SMIM13 | PLAGL2 | 0.671884 | 3 | 0 | 3 |
| SMIM13 | GOLIM4 | 0.659574 | 4 | 0 | 4 |
| SMIM13 | ITGB1 | 0.658516 | 6 | 0 | 6 |
| SMIM13 | ZNF281 | 0.648606 | 7 | 0 | 7 |
| SMIM13 | MAD2L1BP | 0.647779 | 3 | 0 | 3 |
| SMIM13 | EIF5A2 | 0.646769 | 6 | 0 | 5 |
| SMIM13 | NOL7 | 0.644793 | 6 | 0 | 5 |
| SMIM13 | PSMD12 | 0.641056 | 4 | 0 | 4 |
| SMIM13 | NOL11 | 0.640557 | 4 | 0 | 4 |
| SMIM13 | RAD21 | 0.637634 | 3 | 0 | 3 |
| SMIM13 | SMC2 | 0.635707 | 3 | 0 | 3 |
| SMIM13 | CCNJ | 0.623889 | 3 | 0 | 3 |
| SMIM13 | ZNF639 | 0.618511 | 5 | 0 | 4 |
| SMIM13 | PFDN2 | 0.618241 | 6 | 0 | 5 |
| SMIM13 | MORC2 | 0.617719 | 5 | 0 | 3 |
| SMIM13 | EIF5B | 0.617663 | 3 | 0 | 3 |
| SMIM13 | RIOK1 | 0.617267 | 7 | 0 | 5 |
| SMIM13 | NUDCD1 | 0.614927 | 5 | 0 | 4 |
| SMIM13 | CAMSAP2 | 0.61461 | 6 | 0 | 5 |
For details and further investigation, click here
