| Full name: small nuclear ribonucleoprotein polypeptide F | Alias Symbol: Sm-F | ||
| Type: protein-coding gene | Cytoband: 12q23.1 | ||
| Entrez ID: 6636 | HGNC ID: HGNC:11162 | Ensembl Gene: ENSG00000139343 | OMIM ID: 603541 |
| Drug and gene relationship at DGIdb | |||
Expression of SNRPF:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNRPF | 6636 | 203832_at | 0.3769 | 0.3849 | |
| GSE20347 | SNRPF | 6636 | 203832_at | 0.4148 | 0.0204 | |
| GSE23400 | SNRPF | 6636 | 203832_at | 0.4727 | 0.0000 | |
| GSE26886 | SNRPF | 6636 | 203832_at | 0.8007 | 0.0000 | |
| GSE29001 | SNRPF | 6636 | 203832_at | 0.1269 | 0.5640 | |
| GSE38129 | SNRPF | 6636 | 203832_at | 0.7231 | 0.0000 | |
| GSE45670 | SNRPF | 6636 | 203832_at | 0.4060 | 0.0011 | |
| GSE53622 | SNRPF | 6636 | 141715 | 0.6074 | 0.0000 | |
| GSE53624 | SNRPF | 6636 | 141715 | 0.6582 | 0.0000 | |
| GSE63941 | SNRPF | 6636 | 203832_at | 0.5079 | 0.1398 | |
| GSE77861 | SNRPF | 6636 | 203832_at | 0.2649 | 0.2564 | |
| GSE97050 | SNRPF | 6636 | A_23_P117068 | 0.5748 | 0.1782 | |
| SRP007169 | SNRPF | 6636 | RNAseq | 0.5770 | 0.1412 | |
| SRP008496 | SNRPF | 6636 | RNAseq | 0.4400 | 0.1570 | |
| SRP064894 | SNRPF | 6636 | RNAseq | 0.5961 | 0.0179 | |
| SRP133303 | SNRPF | 6636 | RNAseq | 0.5187 | 0.0084 | |
| SRP159526 | SNRPF | 6636 | RNAseq | 0.7600 | 0.0024 | |
| SRP193095 | SNRPF | 6636 | RNAseq | 0.0242 | 0.8909 | |
| SRP219564 | SNRPF | 6636 | RNAseq | 0.2937 | 0.3749 | |
| TCGA | SNRPF | 6636 | RNAseq | 0.3622 | 0.0000 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SNRPF expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SNRPF:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNRPF | 6636 | 3 | 1 | 26 | |
| GSE20123 | SNRPF | 6636 | 3 | 1 | 26 | |
| GSE43470 | SNRPF | 6636 | 3 | 0 | 40 | |
| GSE46452 | SNRPF | 6636 | 9 | 1 | 49 | |
| GSE47630 | SNRPF | 6636 | 9 | 1 | 30 | |
| GSE54993 | SNRPF | 6636 | 0 | 5 | 65 | |
| GSE54994 | SNRPF | 6636 | 4 | 1 | 48 | |
| GSE60625 | SNRPF | 6636 | 0 | 0 | 11 | |
| GSE74703 | SNRPF | 6636 | 3 | 0 | 33 | |
| GSE74704 | SNRPF | 6636 | 1 | 1 | 18 | |
| TCGA | SNRPF | 6636 | 18 | 10 | 68 |
Total number of gains: 53; Total number of losses: 21; Total Number of normals: 414.
Somatic mutations of SNRPF:
Generating mutation plots.
Highly correlated genes for SNRPF:
Showing top 20/1531 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNRPF | COQ4 | 0.83393 | 3 | 0 | 3 |
| SNRPF | CEP89 | 0.767657 | 3 | 0 | 3 |
| SNRPF | DVL1 | 0.764743 | 3 | 0 | 3 |
| SNRPF | ZNF766 | 0.757054 | 3 | 0 | 3 |
| SNRPF | TBC1D16 | 0.749392 | 3 | 0 | 3 |
| SNRPF | ALKBH6 | 0.747973 | 3 | 0 | 3 |
| SNRPF | TP53I13 | 0.744731 | 3 | 0 | 3 |
| SNRPF | RPS19BP1 | 0.743217 | 4 | 0 | 3 |
| SNRPF | CPT1A | 0.733259 | 3 | 0 | 3 |
| SNRPF | SDR39U1 | 0.730663 | 3 | 0 | 3 |
| SNRPF | TM9SF1 | 0.720062 | 3 | 0 | 3 |
| SNRPF | RBM26 | 0.718125 | 3 | 0 | 3 |
| SNRPF | TRIM59 | 0.718109 | 4 | 0 | 4 |
| SNRPF | CIT | 0.716769 | 3 | 0 | 3 |
| SNRPF | EXOSC10 | 0.714563 | 5 | 0 | 5 |
| SNRPF | TMEM237 | 0.712549 | 3 | 0 | 3 |
| SNRPF | WDR25 | 0.710068 | 3 | 0 | 3 |
| SNRPF | RAN | 0.708801 | 12 | 0 | 11 |
| SNRPF | WDR4 | 0.700862 | 4 | 0 | 4 |
| SNRPF | BAIAP2L2 | 0.698594 | 3 | 0 | 3 |
For details and further investigation, click here
