| Full name: clarin 2 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 4p15.32 | ||
| Entrez ID: 645104 | HGNC ID: HGNC:33939 | Ensembl Gene: ENSG00000249581 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of CLRN2:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE53622 | CLRN2 | 645104 | 78141 | -0.1894 | 0.0336 | |
| GSE53624 | CLRN2 | 645104 | 78141 | -1.1237 | 0.0000 | |
| GSE97050 | CLRN2 | 645104 | A_33_P3236077 | -0.1342 | 0.5160 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by CLRN2 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CLRN2:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CLRN2 | 645104 | 0 | 18 | 12 | |
| GSE20123 | CLRN2 | 645104 | 0 | 18 | 12 | |
| GSE43470 | CLRN2 | 645104 | 1 | 15 | 27 | |
| GSE46452 | CLRN2 | 645104 | 1 | 36 | 22 | |
| GSE47630 | CLRN2 | 645104 | 1 | 19 | 20 | |
| GSE54993 | CLRN2 | 645104 | 9 | 0 | 61 | |
| GSE54994 | CLRN2 | 645104 | 4 | 12 | 37 | |
| GSE60625 | CLRN2 | 645104 | 0 | 0 | 11 | |
| GSE74703 | CLRN2 | 645104 | 1 | 13 | 22 | |
| GSE74704 | CLRN2 | 645104 | 0 | 11 | 9 | |
| TCGA | CLRN2 | 645104 | 9 | 48 | 39 |
Total number of gains: 26; Total number of losses: 190; Total Number of normals: 272.
Somatic mutations of CLRN2:
Generating mutation plots.
Highly correlated genes for CLRN2:
Showing top 20/104 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CLRN2 | PSPN | 0.812639 | 3 | 0 | 3 |
| CLRN2 | BEST3 | 0.780775 | 3 | 0 | 3 |
| CLRN2 | NOBOX | 0.78046 | 3 | 0 | 3 |
| CLRN2 | KIRREL2 | 0.755017 | 3 | 0 | 3 |
| CLRN2 | GRIK4 | 0.753405 | 3 | 0 | 3 |
| CLRN2 | FXYD2 | 0.752831 | 3 | 0 | 3 |
| CLRN2 | SLC22A31 | 0.747335 | 3 | 0 | 3 |
| CLRN2 | OR7A17 | 0.747057 | 3 | 0 | 3 |
| CLRN2 | C8G | 0.745623 | 3 | 0 | 3 |
| CLRN2 | SCNN1D | 0.738514 | 3 | 0 | 3 |
| CLRN2 | ARMC5 | 0.736029 | 3 | 0 | 3 |
| CLRN2 | STRC | 0.731867 | 3 | 0 | 3 |
| CLRN2 | GPR173 | 0.728989 | 3 | 0 | 3 |
| CLRN2 | MAP3K10 | 0.725767 | 3 | 0 | 3 |
| CLRN2 | CELF5 | 0.723614 | 3 | 0 | 3 |
| CLRN2 | RNF180 | 0.718052 | 3 | 0 | 3 |
| CLRN2 | OR2C1 | 0.71796 | 3 | 0 | 3 |
| CLRN2 | DNAJB8 | 0.716007 | 3 | 0 | 3 |
| CLRN2 | SLC22A12 | 0.714902 | 3 | 0 | 3 |
| CLRN2 | KRT3 | 0.714663 | 3 | 0 | 3 |
For details and further investigation, click here
