| Full name: cold shock domain containing C2 | Alias Symbol: PIPPin | ||
| Type: protein-coding gene | Cytoband: 22q13.2 | ||
| Entrez ID: 27254 | HGNC ID: HGNC:30359 | Ensembl Gene: ENSG00000172346 | OMIM ID: 617689 |
| Drug and gene relationship at DGIdb | |||
Expression of CSDC2:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CSDC2 | 27254 | 209981_at | -0.5050 | 0.0399 | |
| GSE20347 | CSDC2 | 27254 | 209981_at | -0.0968 | 0.2984 | |
| GSE23400 | CSDC2 | 27254 | 209981_at | -0.2032 | 0.0000 | |
| GSE26886 | CSDC2 | 27254 | 209981_at | 0.0351 | 0.8101 | |
| GSE29001 | CSDC2 | 27254 | 209981_at | -0.1617 | 0.3029 | |
| GSE38129 | CSDC2 | 27254 | 209981_at | -0.2647 | 0.0023 | |
| GSE45670 | CSDC2 | 27254 | 209981_at | -0.2233 | 0.0147 | |
| GSE53622 | CSDC2 | 27254 | 25053 | -0.2336 | 0.2103 | |
| GSE53624 | CSDC2 | 27254 | 25053 | 0.0542 | 0.6433 | |
| GSE63941 | CSDC2 | 27254 | 209981_at | -0.1365 | 0.5803 | |
| GSE77861 | CSDC2 | 27254 | 209981_at | -0.1469 | 0.1101 | |
| GSE97050 | CSDC2 | 27254 | A_24_P177279 | 0.0388 | 0.9091 | |
| SRP007169 | CSDC2 | 27254 | RNAseq | 4.1125 | 0.0040 | |
| SRP064894 | CSDC2 | 27254 | RNAseq | 0.1021 | 0.8261 | |
| SRP133303 | CSDC2 | 27254 | RNAseq | -0.2024 | 0.4207 | |
| SRP159526 | CSDC2 | 27254 | RNAseq | 0.8958 | 0.1590 | |
| SRP193095 | CSDC2 | 27254 | RNAseq | 0.1437 | 0.4295 | |
| SRP219564 | CSDC2 | 27254 | RNAseq | -0.1359 | 0.8719 | |
| TCGA | CSDC2 | 27254 | RNAseq | -0.8452 | 0.0028 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by CSDC2 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CSDC2:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CSDC2 | 27254 | 6 | 5 | 19 | |
| GSE20123 | CSDC2 | 27254 | 6 | 4 | 20 | |
| GSE43470 | CSDC2 | 27254 | 5 | 6 | 32 | |
| GSE46452 | CSDC2 | 27254 | 31 | 2 | 26 | |
| GSE47630 | CSDC2 | 27254 | 9 | 4 | 27 | |
| GSE54993 | CSDC2 | 27254 | 3 | 6 | 61 | |
| GSE54994 | CSDC2 | 27254 | 11 | 8 | 34 | |
| GSE60625 | CSDC2 | 27254 | 5 | 0 | 6 | |
| GSE74703 | CSDC2 | 27254 | 5 | 4 | 27 | |
| GSE74704 | CSDC2 | 27254 | 3 | 2 | 15 | |
| TCGA | CSDC2 | 27254 | 26 | 14 | 56 |
Total number of gains: 110; Total number of losses: 55; Total Number of normals: 323.
Somatic mutations of CSDC2:
Generating mutation plots.
Highly correlated genes for CSDC2:
Showing top 20/709 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CSDC2 | NLRP12 | 0.7402 | 3 | 0 | 3 |
| CSDC2 | USP54 | 0.72342 | 4 | 0 | 4 |
| CSDC2 | SLC25A26 | 0.718402 | 3 | 0 | 3 |
| CSDC2 | PHYHD1 | 0.717425 | 4 | 0 | 4 |
| CSDC2 | C2orf16 | 0.70282 | 4 | 0 | 4 |
| CSDC2 | FAM149B1 | 0.699528 | 3 | 0 | 3 |
| CSDC2 | SESN1 | 0.691041 | 3 | 0 | 3 |
| CSDC2 | ARHGAP31 | 0.690992 | 3 | 0 | 3 |
| CSDC2 | TNFRSF10C | 0.683918 | 4 | 0 | 4 |
| CSDC2 | CEACAM4 | 0.681541 | 4 | 0 | 3 |
| CSDC2 | KAT7 | 0.678378 | 3 | 0 | 3 |
| CSDC2 | RBP7 | 0.673552 | 3 | 0 | 3 |
| CSDC2 | SPAG16 | 0.673476 | 4 | 0 | 4 |
| CSDC2 | SNORA68 | 0.667951 | 3 | 0 | 3 |
| CSDC2 | GRK5 | 0.666651 | 4 | 0 | 3 |
| CSDC2 | HCG22 | 0.666167 | 3 | 0 | 3 |
| CSDC2 | RPS24 | 0.661891 | 3 | 0 | 3 |
| CSDC2 | ZNF747 | 0.660503 | 6 | 0 | 6 |
| CSDC2 | CKM | 0.660197 | 4 | 0 | 4 |
| CSDC2 | SLC46A2 | 0.65978 | 4 | 0 | 4 |
For details and further investigation, click here
