EGFR

 

Full name: epidermal growth factor receptor Alias Symbol: ERBB1
Type: protein-coding gene Cytoband: 7p11.2
Entrez ID: 1956 HGNC ID: HGNC:3236 Ensembl Gene: ENSG00000146648 OMIM ID: 131550
Drug and gene relationship at DGIdb
Screen Evidence:
  • Knocking out of this gene by CRIPR/Cas9 screen found 57/325 cell lines had fitness change in Project Score.
  • This gene has been idenfitied as a common driver in this paper.
  • Knocking out of this gene by CRIPR/Cas9 screen found altered tolerance on DNA toxicity in Genotoxic Screens.

 

EGFR involved pathways:

KEGG pathway Description View
hsa04010MAPK signaling pathway
hsa04012ErbB signaling pathway
hsa04014Ras signaling pathway
hsa04015Rap1 signaling pathway
hsa04020Calcium signaling pathway
hsa04066HIF-1 signaling pathway
hsa04068FoxO signaling pathway
hsa04072Phospholipase D signaling pathway
hsa04151PI3K-Akt signaling pathway
hsa04510Focal adhesion
hsa04520Adherens junction
hsa04540Gap junction
hsa04810Regulation of actin cytoskeleton
hsa04912GnRH signaling pathway
hsa04915Estrogen signaling pathway
hsa04921Oxytocin signaling pathway
hsa05120Epithelial cell signaling in Helicobacter pylori infection
hsa05160Hepatitis C
hsa05200Pathways in cancer
hsa05205Proteoglycans in cancer
hsa05212Pancreatic cancer
hsa05213Endometrial cancer
hsa05214Glioma
hsa05215Prostate cancer
hsa05218Melanoma
hsa05219Bladder cancer
hsa05223Non-small cell lung cancer
hsa05231Choline metabolism in cancer

 

Expression of EGFR:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 EGFR 1956 201983_s_at -0.0189 0.9813
GSE20347 EGFR 1956 201983_s_at 0.6717 0.0241
GSE23400 EGFR 1956 201983_s_at 0.7661 0.0001
GSE26886 EGFR 1956 201983_s_at 1.3177 0.0001
GSE29001 EGFR 1956 201983_s_at 0.9551 0.0866
GSE38129 EGFR 1956 201983_s_at 0.5322 0.1130
GSE45670 EGFR 1956 224999_at 0.0918 0.7140
GSE53622 EGFR 1956 47004 0.7220 0.0000
GSE53624 EGFR 1956 47004 0.7309 0.0000
GSE63941 EGFR 1956 201983_s_at 2.9877 0.0010
GSE77861 EGFR 1956 201983_s_at 0.9697 0.0637
GSE97050 EGFR 1956 A_23_P215790 0.4537 0.2308
SRP008496 EGFR 1956 RNAseq 3.4615 0.0001
SRP064894 EGFR 1956 RNAseq 1.0714 0.0053
SRP133303 EGFR 1956 RNAseq 0.3125 0.2705
SRP159526 EGFR 1956 RNAseq 0.6850 0.0597
SRP193095 EGFR 1956 RNAseq 1.0429 0.0002
SRP219564 EGFR 1956 RNAseq 0.3769 0.4021
TCGA EGFR 1956 RNAseq 0.2376 0.0220

Upregulated datasets: 5; Downregulated datasets: 0.  


 

Survival by EGFR expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of EGFR:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 EGFR 1956 14 0 16
GSE20123 EGFR 1956 12 0 18
GSE43470 EGFR 1956 6 0 37
GSE46452 EGFR 1956 13 0 46
GSE47630 EGFR 1956 10 1 29
GSE54993 EGFR 1956 0 11 59
GSE54994 EGFR 1956 18 1 34
GSE60625 EGFR 1956 0 0 11
GSE74703 EGFR 1956 6 0 30
GSE74704 EGFR 1956 6 0 14
TCGA EGFR 1956 57 5 34

Total number of gains: 142; Total number of losses: 18; Total Number of normals: 328.  


 

Somatic mutations of EGFR:

 

Generating mutation plots.

 

Highly correlated genes for EGFR:

 

Showing top 20/583 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
EGFRCHST30.725451303
EGFRLRRC8A0.698022303
EGFRMB21D20.697188303
EGFRRILPL10.695636303
EGFRRRNAD10.691063303
EGFRELOVL70.685698404
EGFRSLC41A10.682154303
EGFRALKBH60.681871303
EGFRTMEM1600.679864303
EGFRTMEM1380.677279404
EGFRCHCHD60.676066303
EGFRDHX360.674033504
EGFRC12orf450.669599303
EGFRMRPS260.66652303
EGFRCYTH30.665647403
EGFRPHF140.664786505
EGFRCNTN10.660293303
EGFRHSPA130.656189303
EGFRCMTM40.655709303
EGFRTRMT2B0.654338404

For details and further investigation, click here