| Full name: highly accelerated region 1A | Alias Symbol: HAR1F|NCRNA00064|LINC00064 | ||
| Type: non-coding RNA | Cytoband: 20q13.33 | ||
| Entrez ID: 768096 | HGNC ID: HGNC:33117 | Ensembl Gene: ENSG00000225978 | OMIM ID: 610556 |
Expression of HAR1A:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | HAR1A | 768096 | 1557098_s_at | -0.3083 | 0.3835 | |
| GSE26886 | HAR1A | 768096 | 1557098_s_at | 0.1194 | 0.4514 | |
| GSE45670 | HAR1A | 768096 | 1557098_s_at | -0.1749 | 0.1941 | |
| GSE53622 | HAR1A | 768096 | 24810 | -0.4600 | 0.0000 | |
| GSE53624 | HAR1A | 768096 | 24810 | -1.4284 | 0.0000 | |
| GSE63941 | HAR1A | 768096 | 1557098_s_at | 0.1482 | 0.7485 | |
| GSE77861 | HAR1A | 768096 | 1557098_s_at | -0.0271 | 0.7833 | |
| SRP133303 | HAR1A | 768096 | RNAseq | 0.0193 | 0.9256 | |
| SRP159526 | HAR1A | 768096 | RNAseq | 2.4502 | 0.0177 | |
| SRP219564 | HAR1A | 768096 | RNAseq | -0.3635 | 0.6463 | |
| TCGA | HAR1A | 768096 | RNAseq | -0.9093 | 0.0678 |
Upregulated datasets: 1; Downregulated datasets: 1.
Survival by HAR1A expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of HAR1A:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | HAR1A | 768096 | 14 | 2 | 14 | |
| GSE20123 | HAR1A | 768096 | 14 | 2 | 14 | |
| GSE43470 | HAR1A | 768096 | 11 | 1 | 31 | |
| GSE46452 | HAR1A | 768096 | 35 | 0 | 24 | |
| GSE47630 | HAR1A | 768096 | 25 | 1 | 14 | |
| GSE54993 | HAR1A | 768096 | 0 | 17 | 53 | |
| GSE54994 | HAR1A | 768096 | 29 | 0 | 24 | |
| GSE60625 | HAR1A | 768096 | 0 | 0 | 11 | |
| GSE74703 | HAR1A | 768096 | 10 | 0 | 26 | |
| GSE74704 | HAR1A | 768096 | 11 | 0 | 9 | |
| TCGA | HAR1A | 768096 | 44 | 4 | 48 |
Total number of gains: 193; Total number of losses: 27; Total Number of normals: 268.
Somatic mutations of HAR1A:
Generating mutation plots.
Highly correlated genes for HAR1A:
Showing top 20/64 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| HAR1A | HRC | 0.716236 | 4 | 0 | 3 |
| HAR1A | JAZF1-AS1 | 0.70715 | 3 | 0 | 3 |
| HAR1A | PKD1L2 | 0.682314 | 3 | 0 | 3 |
| HAR1A | SHISA4 | 0.673199 | 3 | 0 | 3 |
| HAR1A | GRIK3 | 0.667023 | 3 | 0 | 3 |
| HAR1A | IL11RA | 0.657137 | 5 | 0 | 4 |
| HAR1A | TPBGL | 0.655111 | 4 | 0 | 3 |
| HAR1A | LINC00702 | 0.647224 | 3 | 0 | 3 |
| HAR1A | CUEDC1 | 0.642464 | 3 | 0 | 3 |
| HAR1A | MOG | 0.63946 | 3 | 0 | 3 |
| HAR1A | WT1-AS | 0.638926 | 4 | 0 | 3 |
| HAR1A | HTR3A | 0.637496 | 4 | 0 | 3 |
| HAR1A | NCR1 | 0.637232 | 3 | 0 | 3 |
| HAR1A | HIF3A | 0.637031 | 3 | 0 | 3 |
| HAR1A | RNF180 | 0.634012 | 4 | 0 | 3 |
| HAR1A | PHYHIP | 0.631068 | 3 | 0 | 3 |
| HAR1A | KBTBD12 | 0.619208 | 4 | 0 | 3 |
| HAR1A | TRAF3IP2-AS1 | 0.616023 | 3 | 0 | 3 |
| HAR1A | ELN | 0.609168 | 4 | 0 | 3 |
| HAR1A | KLHL10 | 0.607577 | 4 | 0 | 3 |
For details and further investigation, click here
