| Full name: HLA complex group 9 | Alias Symbol: PERB11|HCGIX|HCGIX4|HCGIX-4 | ||
| Type: non-coding RNA | Cytoband: 6p22.1 | ||
| Entrez ID: 10255 | HGNC ID: HGNC:21243 | Ensembl Gene: ENSG00000204625 | OMIM ID: 615797 |
| Drug and gene relationship at DGIdb | |||
Expression of HCG9:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | HCG9 | 10255 | 208287_at | -0.1611 | 0.5301 | |
| GSE20347 | HCG9 | 10255 | 208287_at | -0.0211 | 0.8212 | |
| GSE23400 | HCG9 | 10255 | 208287_at | -0.1669 | 0.0000 | |
| GSE26886 | HCG9 | 10255 | 208287_at | 0.0842 | 0.3898 | |
| GSE29001 | HCG9 | 10255 | 208287_at | -0.1003 | 0.5888 | |
| GSE38129 | HCG9 | 10255 | 208287_at | -0.1053 | 0.0963 | |
| GSE45670 | HCG9 | 10255 | 208287_at | 0.0584 | 0.4173 | |
| GSE53622 | HCG9 | 10255 | 29066 | -0.1087 | 0.3208 | |
| GSE53624 | HCG9 | 10255 | 39427 | -0.1143 | 0.3600 | |
| GSE63941 | HCG9 | 10255 | 208287_at | 0.2783 | 0.0167 | |
| GSE77861 | HCG9 | 10255 | 208287_at | -0.3112 | 0.0129 | |
| SRP133303 | HCG9 | 10255 | RNAseq | 0.1676 | 0.4547 | |
| SRP193095 | HCG9 | 10255 | RNAseq | 0.2958 | 0.0667 | |
| SRP219564 | HCG9 | 10255 | RNAseq | -0.1074 | 0.8465 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by HCG9 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of HCG9:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | HCG9 | 10255 | 3 | 1 | 26 | |
| GSE20123 | HCG9 | 10255 | 3 | 1 | 26 | |
| GSE43470 | HCG9 | 10255 | 5 | 0 | 38 | |
| GSE46452 | HCG9 | 10255 | 1 | 10 | 48 | |
| GSE47630 | HCG9 | 10255 | 7 | 4 | 29 | |
| GSE54993 | HCG9 | 10255 | 2 | 1 | 67 | |
| GSE54994 | HCG9 | 10255 | 11 | 4 | 38 | |
| GSE60625 | HCG9 | 10255 | 0 | 1 | 10 | |
| GSE74703 | HCG9 | 10255 | 5 | 0 | 31 | |
| GSE74704 | HCG9 | 10255 | 1 | 0 | 19 | |
| TCGA | HCG9 | 10255 | 16 | 18 | 62 |
Total number of gains: 54; Total number of losses: 40; Total Number of normals: 394.
Somatic mutations of HCG9:
Generating mutation plots.
Highly correlated genes for HCG9:
Showing top 20/569 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| HCG9 | SPATA31E1 | 0.747955 | 3 | 0 | 3 |
| HCG9 | KRT35 | 0.726765 | 4 | 0 | 4 |
| HCG9 | KCNJ4 | 0.702191 | 3 | 0 | 3 |
| HCG9 | POLM | 0.701196 | 3 | 0 | 3 |
| HCG9 | CPA1 | 0.695109 | 3 | 0 | 3 |
| HCG9 | CBLN4 | 0.688704 | 3 | 0 | 3 |
| HCG9 | KIAA1614 | 0.688274 | 5 | 0 | 5 |
| HCG9 | LINC00862 | 0.684191 | 3 | 0 | 3 |
| HCG9 | BFSP2-AS1 | 0.681718 | 4 | 0 | 4 |
| HCG9 | SLC9A7 | 0.681151 | 3 | 0 | 3 |
| HCG9 | ZP2 | 0.680682 | 3 | 0 | 3 |
| HCG9 | HCN4 | 0.6756 | 3 | 0 | 3 |
| HCG9 | KCNF1 | 0.670273 | 5 | 0 | 5 |
| HCG9 | RBMXL2 | 0.66494 | 4 | 0 | 3 |
| HCG9 | DNAI1 | 0.664863 | 5 | 0 | 5 |
| HCG9 | PHF7 | 0.662928 | 5 | 0 | 4 |
| HCG9 | KCNIP2 | 0.660867 | 3 | 0 | 3 |
| HCG9 | HMHB1 | 0.660372 | 3 | 0 | 3 |
| HCG9 | CRYBA4 | 0.660004 | 4 | 0 | 4 |
| HCG9 | TMEM179 | 0.659781 | 3 | 0 | 3 |
For details and further investigation, click here
