HOXC12

 

Full name: homeobox C12 Alias Symbol: 
Type: protein-coding gene Cytoband: 12q13.13
Entrez ID: 3228 HGNC ID: HGNC:5124 Ensembl Gene: ENSG00000123407 OMIM ID: 142975
Drug and gene relationship at DGIdb

 

Expression of HOXC12:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 HOXC12 3228 1553512_at -0.0228 0.9537
GSE26886 HOXC12 3228 1553512_at 0.1585 0.0951
GSE45670 HOXC12 3228 1553512_at 0.0903 0.4178
GSE53622 HOXC12 3228 28176 0.8440 0.0000
GSE53624 HOXC12 3228 28176 0.7201 0.0000
GSE63941 HOXC12 3228 1553512_at 0.3645 0.0555
GSE77861 HOXC12 3228 1553512_at 0.0058 0.9670
TCGA HOXC12 3228 RNAseq 3.6747 0.0083

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by HOXC12 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of HOXC12:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 HOXC12 3228 4 1 25
GSE20123 HOXC12 3228 4 1 25
GSE43470 HOXC12 3228 3 0 40
GSE46452 HOXC12 3228 7 1 51
GSE47630 HOXC12 3228 10 2 28
GSE54993 HOXC12 3228 0 5 65
GSE54994 HOXC12 3228 4 1 48
GSE60625 HOXC12 3228 0 0 11
GSE74703 HOXC12 3228 3 0 33
GSE74704 HOXC12 3228 3 1 16
TCGA HOXC12 3228 15 12 69

Total number of gains: 53; Total number of losses: 24; Total Number of normals: 411.  

 

Somatic mutations of HOXC12:

 

Generating mutation plots.

 

Highly correlated genes for HOXC12:

 

Showing all 17 correlated genes with mean PCC>0.5.

Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
HOXC12LINC003540.625503303
HOXC12TUBB10.588396403
HOXC12ZNF5790.585159303
HOXC12TNNI30.57259403
HOXC12TFDP20.571482303
HOXC12GREB1L0.56837303
HOXC12HBQ10.545612403
HOXC12ASCL50.532336403
HOXC12TMEM151B0.527882403
HOXC12SIX3-AS10.52583603
HOXC12CCDC420.524645403
HOXC12LMX1B0.516237603
HOXC12GPR320.515041403
HOXC12DPYSL50.51455403
HOXC12FFAR10.511747403
HOXC12NPBWR10.509051503
HOXC12CCDC1510.507259403

For details and further investigation, click here