| Full name: SIX3 antisense RNA 1 | Alias Symbol: SIX3OS | ||
| Type: non-coding RNA | Cytoband: 2p21 | ||
| Entrez ID: 100506108 | HGNC ID: HGNC:40532 | Ensembl Gene: ENSG00000236502 | OMIM ID: |
Expression of SIX3-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SIX3-AS1 | 100506108 | 243440_at | -0.0358 | 0.9028 | |
| GSE26886 | SIX3-AS1 | 100506108 | 243440_at | 0.1703 | 0.1635 | |
| GSE45670 | SIX3-AS1 | 100506108 | 243440_at | -0.0718 | 0.4949 | |
| GSE53622 | SIX3-AS1 | 100506108 | 47021 | -0.0258 | 0.8172 | |
| GSE53624 | SIX3-AS1 | 100506108 | 47021 | 0.2017 | 0.0142 | |
| GSE63941 | SIX3-AS1 | 100506108 | 243440_at | 0.2925 | 0.1301 | |
| GSE77861 | SIX3-AS1 | 100506108 | 243440_at | -0.0546 | 0.5920 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SIX3-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SIX3-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SIX3-AS1 | 100506108 | 10 | 1 | 19 | |
| GSE20123 | SIX3-AS1 | 100506108 | 9 | 1 | 20 | |
| GSE43470 | SIX3-AS1 | 100506108 | 5 | 0 | 38 | |
| GSE46452 | SIX3-AS1 | 100506108 | 1 | 4 | 54 | |
| GSE47630 | SIX3-AS1 | 100506108 | 7 | 0 | 33 | |
| GSE54993 | SIX3-AS1 | 100506108 | 0 | 5 | 65 | |
| GSE54994 | SIX3-AS1 | 100506108 | 10 | 0 | 43 | |
| GSE60625 | SIX3-AS1 | 100506108 | 0 | 3 | 8 | |
| GSE74703 | SIX3-AS1 | 100506108 | 5 | 0 | 31 | |
| GSE74704 | SIX3-AS1 | 100506108 | 9 | 1 | 10 |
Total number of gains: 56; Total number of losses: 15; Total Number of normals: 321.
Somatic mutations of SIX3-AS1:
Generating mutation plots.
Highly correlated genes for SIX3-AS1:
Showing top 20/224 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SIX3-AS1 | VWA7 | 0.735032 | 3 | 0 | 3 |
| SIX3-AS1 | TGM6 | 0.693643 | 3 | 0 | 3 |
| SIX3-AS1 | ADAM30 | 0.683116 | 4 | 0 | 4 |
| SIX3-AS1 | CDH23 | 0.672437 | 3 | 0 | 3 |
| SIX3-AS1 | RHPN1 | 0.667461 | 3 | 0 | 3 |
| SIX3-AS1 | MAG | 0.661306 | 3 | 0 | 3 |
| SIX3-AS1 | BEGAIN | 0.660178 | 3 | 0 | 3 |
| SIX3-AS1 | RNF31 | 0.651498 | 3 | 0 | 3 |
| SIX3-AS1 | HOXA11-AS | 0.651245 | 4 | 0 | 3 |
| SIX3-AS1 | F2RL3 | 0.649706 | 3 | 0 | 3 |
| SIX3-AS1 | ADAMTSL2 | 0.644932 | 3 | 0 | 3 |
| SIX3-AS1 | LRRC71 | 0.644668 | 4 | 0 | 3 |
| SIX3-AS1 | KCNQ4 | 0.643782 | 3 | 0 | 3 |
| SIX3-AS1 | SPACA3 | 0.641415 | 3 | 0 | 3 |
| SIX3-AS1 | GUCA1A | 0.641063 | 3 | 0 | 3 |
| SIX3-AS1 | LINC00671 | 0.641047 | 3 | 0 | 3 |
| SIX3-AS1 | TMEM255B | 0.640317 | 3 | 0 | 3 |
| SIX3-AS1 | NOTUM | 0.633514 | 3 | 0 | 3 |
| SIX3-AS1 | ASB10 | 0.632738 | 3 | 0 | 3 |
| SIX3-AS1 | MROH2A | 0.632505 | 3 | 0 | 3 |
For details and further investigation, click here
