| Full name: long intergenic non-protein coding RNA 308 | Alias Symbol: PRED16 | ||
| Type: non-coding RNA | Cytoband: 21q21.1 | ||
| Entrez ID: 54143 | HGNC ID: HGNC:16023 | Ensembl Gene: ENSG00000184856 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00308:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00308 | 54143 | 1552604_at | -0.0639 | 0.8744 | |
| GSE26886 | LINC00308 | 54143 | 1552604_at | -0.0620 | 0.4839 | |
| GSE45670 | LINC00308 | 54143 | 1552604_at | 0.0828 | 0.2946 | |
| GSE53622 | LINC00308 | 54143 | 43950 | 0.2752 | 0.0027 | |
| GSE53624 | LINC00308 | 54143 | 43950 | 0.4193 | 0.0000 | |
| GSE63941 | LINC00308 | 54143 | 1552604_at | 0.0609 | 0.7571 | |
| GSE77861 | LINC00308 | 54143 | 1552604_at | 0.0484 | 0.6448 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00308 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00308:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00308 | 54143 | 1 | 12 | 17 | |
| GSE20123 | LINC00308 | 54143 | 1 | 12 | 17 | |
| GSE43470 | LINC00308 | 54143 | 1 | 9 | 33 | |
| GSE46452 | LINC00308 | 54143 | 1 | 21 | 37 | |
| GSE47630 | LINC00308 | 54143 | 6 | 17 | 17 | |
| GSE54993 | LINC00308 | 54143 | 9 | 3 | 58 | |
| GSE54994 | LINC00308 | 54143 | 1 | 9 | 43 | |
| GSE60625 | LINC00308 | 54143 | 0 | 0 | 11 | |
| GSE74703 | LINC00308 | 54143 | 1 | 7 | 28 | |
| GSE74704 | LINC00308 | 54143 | 0 | 8 | 12 | |
| TCGA | LINC00308 | 54143 | 8 | 39 | 49 |
Total number of gains: 29; Total number of losses: 137; Total Number of normals: 322.
Somatic mutations of LINC00308:
Generating mutation plots.
Highly correlated genes for LINC00308:
Showing top 20/23 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00308 | TEX26-AS1 | 0.686672 | 3 | 0 | 3 |
| LINC00308 | INSC | 0.616081 | 3 | 0 | 3 |
| LINC00308 | AANAT | 0.611172 | 4 | 0 | 3 |
| LINC00308 | OR1F1 | 0.603594 | 4 | 0 | 3 |
| LINC00308 | GRK1 | 0.598486 | 3 | 0 | 3 |
| LINC00308 | KCNJ9 | 0.589115 | 3 | 0 | 3 |
| LINC00308 | CREB3L3 | 0.583042 | 3 | 0 | 3 |
| LINC00308 | SLC17A7 | 0.577389 | 4 | 0 | 4 |
| LINC00308 | GPR32 | 0.574025 | 3 | 0 | 3 |
| LINC00308 | LIN28A | 0.568519 | 3 | 0 | 3 |
| LINC00308 | LINC00494 | 0.559061 | 4 | 0 | 3 |
| LINC00308 | NRG1-IT1 | 0.557 | 6 | 0 | 3 |
| LINC00308 | MMP21 | 0.554215 | 4 | 0 | 3 |
| LINC00308 | ZMAT4 | 0.553366 | 4 | 0 | 3 |
| LINC00308 | OR10A3 | 0.547682 | 4 | 0 | 3 |
| LINC00308 | TMEM105 | 0.533802 | 4 | 0 | 3 |
| LINC00308 | NTNG2 | 0.528317 | 4 | 0 | 3 |
| LINC00308 | RBM12B-AS1 | 0.526377 | 3 | 0 | 3 |
| LINC00308 | TXNDC2 | 0.523612 | 4 | 0 | 3 |
| LINC00308 | LINC00470 | 0.523019 | 6 | 0 | 3 |
For details and further investigation, click here
