LINC00313

 

Full name: long intergenic non-protein coding RNA 313 Alias Symbol: 
Type: non-coding RNA Cytoband: 21q22.3
Entrez ID: 114038 HGNC ID: HGNC:16416 Ensembl Gene: ENSG00000185186 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00313:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00313 114038 240589_at 0.0038 0.9891
GSE26886 LINC00313 114038 240589_at 0.1625 0.1257
GSE45670 LINC00313 114038 240589_at -0.0173 0.8817
GSE53622 LINC00313 114038 52831 -0.1318 0.2048
GSE53624 LINC00313 114038 52831 -1.0547 0.0000
GSE63941 LINC00313 114038 240589_at -0.1047 0.4274
GSE77861 LINC00313 114038 240589_at -0.0830 0.4056

Upregulated datasets: 0; Downregulated datasets: 1.  

 

Survival by LINC00313 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00313:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00313 114038 2 8 20
GSE20123 LINC00313 114038 2 8 20
GSE43470 LINC00313 114038 0 13 30
GSE46452 LINC00313 114038 1 21 37
GSE47630 LINC00313 114038 6 17 17
GSE54993 LINC00313 114038 8 1 61
GSE54994 LINC00313 114038 4 8 41
GSE60625 LINC00313 114038 0 0 11
GSE74703 LINC00313 114038 0 10 26
GSE74704 LINC00313 114038 1 4 15
TCGA LINC00313 114038 7 40 49

Total number of gains: 31; Total number of losses: 130; Total Number of normals: 327.  

 

Somatic mutations of LINC00313:

 

Generating mutation plots.

 

Highly correlated genes for LINC00313:

 

Showing top 20/86 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00313HPCA0.746964303
LINC00313RBP20.686962303
LINC00313NANOG0.679011303
LINC00313EXTL10.670851303
LINC00313UPB10.662375303
LINC00313PRDM80.650252404
LINC00313CADM30.647743303
LINC00313C6orf2230.64748303
LINC00313GPR1730.645959404
LINC00313TEX26-AS10.638782303
LINC00313LINC004270.63801303
LINC00313INF20.627747303
LINC00313NTN30.627653303
LINC00313NEU40.62492303
LINC00313MAT1A0.624715303
LINC00313SPATA30.624231303
LINC00313SRD5A20.621153303
LINC00313MATN40.620637303
LINC00313CRYBB30.615432303
LINC00313ZNF6830.613754303

For details and further investigation, click here