| Full name: long intergenic non-protein coding RNA 858 | Alias Symbol: CRCAL-2 | ||
| Type: non-coding RNA | Cytoband: 10q23.1 | ||
| Entrez ID: 170425 | HGNC ID: HGNC:27276 | Ensembl Gene: ENSG00000229404 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00858:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00858 | 170425 | 1563821_at | -0.1213 | 0.5655 | |
| GSE26886 | LINC00858 | 170425 | 1563821_at | 0.1929 | 0.1099 | |
| GSE45670 | LINC00858 | 170425 | 1563821_at | 0.0998 | 0.1975 | |
| GSE53622 | LINC00858 | 170425 | 143708 | 0.5496 | 0.0000 | |
| GSE53624 | LINC00858 | 170425 | 143708 | 0.3914 | 0.0031 | |
| GSE63941 | LINC00858 | 170425 | 1563821_at | 0.0752 | 0.7402 | |
| GSE77861 | LINC00858 | 170425 | 1563821_at | -0.0336 | 0.7805 | |
| SRP159526 | LINC00858 | 170425 | RNAseq | 3.5135 | 0.0000 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by LINC00858 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00858:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00858 | 170425 | 1 | 6 | 23 | |
| GSE20123 | LINC00858 | 170425 | 1 | 5 | 24 | |
| GSE43470 | LINC00858 | 170425 | 1 | 6 | 36 | |
| GSE46452 | LINC00858 | 170425 | 0 | 11 | 48 | |
| GSE47630 | LINC00858 | 170425 | 2 | 14 | 24 | |
| GSE54993 | LINC00858 | 170425 | 7 | 0 | 63 | |
| GSE54994 | LINC00858 | 170425 | 1 | 12 | 40 | |
| GSE60625 | LINC00858 | 170425 | 0 | 0 | 11 | |
| GSE74703 | LINC00858 | 170425 | 1 | 4 | 31 | |
| GSE74704 | LINC00858 | 170425 | 0 | 3 | 17 | |
| TCGA | LINC00858 | 170425 | 9 | 25 | 62 |
Total number of gains: 23; Total number of losses: 86; Total Number of normals: 379.
Somatic mutations of LINC00858:
Generating mutation plots.
Highly correlated genes for LINC00858:
Showing top 20/90 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00858 | CDH22 | 0.734989 | 3 | 0 | 3 |
| LINC00858 | SYCN | 0.704377 | 3 | 0 | 3 |
| LINC00858 | NTNG2 | 0.695489 | 3 | 0 | 3 |
| LINC00858 | LINC00857 | 0.694101 | 3 | 0 | 3 |
| LINC00858 | PTAFR | 0.691183 | 3 | 0 | 3 |
| LINC00858 | ROR1-AS1 | 0.690943 | 3 | 0 | 3 |
| LINC00858 | KCNH3 | 0.687463 | 3 | 0 | 3 |
| LINC00858 | EFCAB5 | 0.673124 | 3 | 0 | 3 |
| LINC00858 | HGFAC | 0.668026 | 3 | 0 | 3 |
| LINC00858 | OPRL1 | 0.664208 | 4 | 0 | 3 |
| LINC00858 | ZNF419 | 0.662 | 3 | 0 | 3 |
| LINC00858 | KCTD19 | 0.657786 | 4 | 0 | 4 |
| LINC00858 | NKX6-3 | 0.656934 | 3 | 0 | 3 |
| LINC00858 | PRAP1 | 0.656439 | 3 | 0 | 3 |
| LINC00858 | SLC26A1 | 0.649915 | 3 | 0 | 3 |
| LINC00858 | FIBCD1 | 0.6499 | 3 | 0 | 3 |
| LINC00858 | VWA5B1 | 0.648609 | 4 | 0 | 3 |
| LINC00858 | LRRC71 | 0.639998 | 3 | 0 | 3 |
| LINC00858 | LINC00652 | 0.638673 | 3 | 0 | 3 |
| LINC00858 | BFSP2-AS1 | 0.634857 | 5 | 0 | 3 |
For details and further investigation, click here
