| Full name: long intergenic non-protein coding RNA 884 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 3q29 | ||
| Entrez ID: 401106 | HGNC ID: HGNC:48570 | Ensembl Gene: ENSG00000233058 | OMIM ID: |
Expression of LINC00884:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00884 | 401106 | 1566761_a_at | -0.0093 | 0.9846 | |
| GSE26886 | LINC00884 | 401106 | 1566761_a_at | -0.0605 | 0.5359 | |
| GSE45670 | LINC00884 | 401106 | 1566761_a_at | -0.0505 | 0.6000 | |
| GSE53622 | LINC00884 | 401106 | 54285 | 0.6499 | 0.0005 | |
| GSE53624 | LINC00884 | 401106 | 54285 | 0.5307 | 0.0000 | |
| GSE63941 | LINC00884 | 401106 | 1566761_a_at | -0.3481 | 0.0182 | |
| GSE77861 | LINC00884 | 401106 | 1566761_a_at | -0.0601 | 0.5994 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00884 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00884:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00884 | 401106 | 22 | 0 | 8 | |
| GSE20123 | LINC00884 | 401106 | 22 | 0 | 8 | |
| GSE43470 | LINC00884 | 401106 | 24 | 0 | 19 | |
| GSE46452 | LINC00884 | 401106 | 19 | 1 | 39 | |
| GSE47630 | LINC00884 | 401106 | 27 | 2 | 11 | |
| GSE54993 | LINC00884 | 401106 | 1 | 21 | 48 | |
| GSE54994 | LINC00884 | 401106 | 41 | 0 | 12 | |
| GSE60625 | LINC00884 | 401106 | 0 | 6 | 5 | |
| GSE74703 | LINC00884 | 401106 | 20 | 0 | 16 | |
| GSE74704 | LINC00884 | 401106 | 14 | 0 | 6 | |
| TCGA | LINC00884 | 401106 | 77 | 0 | 19 |
Total number of gains: 267; Total number of losses: 30; Total Number of normals: 191.
Somatic mutations of LINC00884:
Generating mutation plots.
Highly correlated genes for LINC00884:
Showing all 18 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00884 | HSD11B1 | 0.695078 | 3 | 0 | 3 |
| LINC00884 | FBXL7 | 0.690872 | 3 | 0 | 3 |
| LINC00884 | LINC01122 | 0.689317 | 3 | 0 | 3 |
| LINC00884 | DNM3OS | 0.678392 | 3 | 0 | 3 |
| LINC00884 | ZNF667 | 0.618321 | 3 | 0 | 3 |
| LINC00884 | TAGLN3 | 0.604377 | 3 | 0 | 3 |
| LINC00884 | CREB3 | 0.597251 | 3 | 0 | 3 |
| LINC00884 | ACTC1 | 0.5951 | 3 | 0 | 3 |
| LINC00884 | ZNF582-AS1 | 0.585258 | 5 | 0 | 3 |
| LINC00884 | ADAMTS19 | 0.574398 | 4 | 0 | 4 |
| LINC00884 | SMOC1 | 0.57104 | 3 | 0 | 3 |
| LINC00884 | ST6GALNAC5 | 0.56467 | 4 | 0 | 3 |
| LINC00884 | LECT2 | 0.552549 | 5 | 0 | 3 |
| LINC00884 | MAP1LC3C | 0.54396 | 4 | 0 | 3 |
| LINC00884 | LINC00858 | 0.53653 | 4 | 0 | 3 |
| LINC00884 | LINC01279 | 0.530925 | 3 | 0 | 3 |
| LINC00884 | PRSS58 | 0.513271 | 4 | 0 | 3 |
| LINC00884 | LINC00523 | 0.509808 | 4 | 0 | 3 |
For details and further investigation, click here
