| Full name: long intergenic non-protein coding RNA 888 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 3q27.1 | ||
| Entrez ID: 100505687 | HGNC ID: HGNC:48575 | Ensembl Gene: ENSG00000240024 | OMIM ID: |
Expression of LINC00888:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00888 | 100505687 | 236798_at | 0.3614 | 0.6601 | |
| GSE26886 | LINC00888 | 100505687 | 228275_at | 0.7420 | 0.0066 | |
| GSE45670 | LINC00888 | 100505687 | 236798_at | 0.5893 | 0.2623 | |
| GSE63941 | LINC00888 | 100505687 | 236798_at | 0.0588 | 0.9715 | |
| GSE77861 | LINC00888 | 100505687 | 228275_at | 0.5154 | 0.0070 | |
| SRP007169 | LINC00888 | 100505687 | RNAseq | 1.1325 | 0.1767 | |
| SRP064894 | LINC00888 | 100505687 | RNAseq | 1.2173 | 0.0000 | |
| SRP133303 | LINC00888 | 100505687 | RNAseq | 1.6415 | 0.0000 | |
| SRP159526 | LINC00888 | 100505687 | RNAseq | 2.1224 | 0.0000 | |
| SRP219564 | LINC00888 | 100505687 | RNAseq | 0.4941 | 0.4844 |
Upregulated datasets: 3; Downregulated datasets: 0.
Copy number change of LINC00888:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00888 | 100505687 | 25 | 0 | 5 | |
| GSE20123 | LINC00888 | 100505687 | 25 | 0 | 5 | |
| GSE43470 | LINC00888 | 100505687 | 24 | 0 | 19 | |
| GSE46452 | LINC00888 | 100505687 | 19 | 1 | 39 | |
| GSE47630 | LINC00888 | 100505687 | 27 | 2 | 11 | |
| GSE54993 | LINC00888 | 100505687 | 1 | 19 | 50 | |
| GSE54994 | LINC00888 | 100505687 | 40 | 0 | 13 | |
| GSE60625 | LINC00888 | 100505687 | 0 | 6 | 5 | |
| GSE74703 | LINC00888 | 100505687 | 20 | 0 | 16 | |
| GSE74704 | LINC00888 | 100505687 | 17 | 0 | 3 | |
| TCGA | LINC00888 | 100505687 | 77 | 0 | 19 |
Total number of gains: 275; Total number of losses: 28; Total Number of normals: 185.
Somatic mutations of LINC00888:
Generating mutation plots.
Highly correlated genes for LINC00888:
Showing top 20/207 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00888 | PSMD4 | 0.743402 | 3 | 0 | 3 |
| LINC00888 | LBH | 0.720698 | 4 | 0 | 3 |
| LINC00888 | COPZ2 | 0.715219 | 3 | 0 | 3 |
| LINC00888 | FBLN2 | 0.703027 | 3 | 0 | 3 |
| LINC00888 | CALU | 0.698415 | 3 | 0 | 3 |
| LINC00888 | TMEM263 | 0.697201 | 4 | 0 | 4 |
| LINC00888 | SPOCK1 | 0.690407 | 3 | 0 | 3 |
| LINC00888 | FSTL1 | 0.685412 | 4 | 0 | 4 |
| LINC00888 | NAT14 | 0.674144 | 3 | 0 | 3 |
| LINC00888 | FOXF2 | 0.672531 | 3 | 0 | 3 |
| LINC00888 | NIFK-AS1 | 0.67214 | 3 | 0 | 3 |
| LINC00888 | LURAP1L | 0.666213 | 3 | 0 | 3 |
| LINC00888 | GJC1 | 0.665814 | 3 | 0 | 3 |
| LINC00888 | PDE4A | 0.665414 | 3 | 0 | 3 |
| LINC00888 | CCDC71L | 0.660423 | 3 | 0 | 3 |
| LINC00888 | KLHL5 | 0.65989 | 4 | 0 | 4 |
| LINC00888 | DHCR7 | 0.659419 | 3 | 0 | 3 |
| LINC00888 | TTYH2 | 0.657048 | 3 | 0 | 3 |
| LINC00888 | C4orf48 | 0.656858 | 3 | 0 | 3 |
| LINC00888 | ANO1 | 0.655588 | 3 | 0 | 3 |
For details and further investigation, click here
