| Full name: long intergenic non-protein coding RNA 928 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 15q26.1 | ||
| Entrez ID: 283761 | HGNC ID: HGNC:27535 | Ensembl Gene: ENSG00000259218 | OMIM ID: |
Expression of LINC00928:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00928 | 283761 | 1556452_a_at | 0.0766 | 0.7528 | |
| GSE26886 | LINC00928 | 283761 | 1556452_a_at | 0.0197 | 0.8718 | |
| GSE45670 | LINC00928 | 283761 | 1556452_a_at | 0.2421 | 0.0066 | |
| GSE63941 | LINC00928 | 283761 | 1556452_a_at | 0.0793 | 0.6691 | |
| GSE77861 | LINC00928 | 283761 | 1556452_a_at | 0.0167 | 0.8560 | |
| SRP133303 | LINC00928 | 283761 | RNAseq | -0.4922 | 0.0424 |
Upregulated datasets: 0; Downregulated datasets: 0.
Copy number change of LINC00928:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00928 | 283761 | 8 | 2 | 20 | |
| GSE20123 | LINC00928 | 283761 | 8 | 2 | 20 | |
| GSE43470 | LINC00928 | 283761 | 5 | 4 | 34 | |
| GSE46452 | LINC00928 | 283761 | 3 | 7 | 49 | |
| GSE47630 | LINC00928 | 283761 | 8 | 11 | 21 | |
| GSE54993 | LINC00928 | 283761 | 4 | 6 | 60 | |
| GSE54994 | LINC00928 | 283761 | 7 | 6 | 40 | |
| GSE60625 | LINC00928 | 283761 | 4 | 0 | 7 | |
| GSE74703 | LINC00928 | 283761 | 4 | 3 | 29 | |
| GSE74704 | LINC00928 | 283761 | 4 | 2 | 14 | |
| TCGA | LINC00928 | 283761 | 17 | 12 | 67 |
Total number of gains: 72; Total number of losses: 55; Total Number of normals: 361.
Somatic mutations of LINC00928:
Generating mutation plots.
Highly correlated genes for LINC00928:
Showing top 20/53 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00928 | RNASE3 | 0.650521 | 3 | 0 | 3 |
| LINC00928 | MAP3K10 | 0.636196 | 3 | 0 | 3 |
| LINC00928 | CNTD2 | 0.628596 | 3 | 0 | 3 |
| LINC00928 | LCE1E | 0.623893 | 4 | 0 | 3 |
| LINC00928 | PLCB2 | 0.623444 | 3 | 0 | 3 |
| LINC00928 | CCDC60 | 0.622259 | 3 | 0 | 3 |
| LINC00928 | LINC00174 | 0.621093 | 4 | 0 | 4 |
| LINC00928 | PBOV1 | 0.616875 | 3 | 0 | 3 |
| LINC00928 | C1orf100 | 0.608501 | 3 | 0 | 3 |
| LINC00928 | DSCAM | 0.607841 | 4 | 0 | 3 |
| LINC00928 | SUN5 | 0.606674 | 4 | 0 | 3 |
| LINC00928 | FAM217A | 0.605172 | 4 | 0 | 3 |
| LINC00928 | GPR52 | 0.604599 | 4 | 0 | 3 |
| LINC00928 | NTN5 | 0.602896 | 3 | 0 | 3 |
| LINC00928 | BEST1 | 0.599315 | 4 | 0 | 3 |
| LINC00928 | FAM178B | 0.598087 | 3 | 0 | 3 |
| LINC00928 | PTGIR | 0.597132 | 4 | 0 | 4 |
| LINC00928 | CNGB3 | 0.59508 | 5 | 0 | 4 |
| LINC00928 | SMPDL3B | 0.584144 | 4 | 0 | 3 |
| LINC00928 | UNC79 | 0.582775 | 3 | 0 | 3 |
For details and further investigation, click here
