| Full name: long intergenic non-protein coding RNA 933 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 15q25.2 | ||
| Entrez ID: 100506874 | HGNC ID: HGNC:48625 | Ensembl Gene: ENSG00000259728 | OMIM ID: |
Expression of LINC00933:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00933 | 100506874 | 232131_at | -0.2285 | 0.3888 | |
| GSE26886 | LINC00933 | 100506874 | 232131_at | -0.6633 | 0.0121 | |
| GSE45670 | LINC00933 | 100506874 | 232131_at | -0.3510 | 0.0515 | |
| GSE63941 | LINC00933 | 100506874 | 232131_at | -0.9670 | 0.0000 | |
| GSE77861 | LINC00933 | 100506874 | 232131_at | -0.1501 | 0.0935 | |
| SRP064894 | LINC00933 | 100506874 | RNAseq | -0.8644 | 0.0016 | |
| SRP133303 | LINC00933 | 100506874 | RNAseq | -0.4047 | 0.0007 | |
| SRP159526 | LINC00933 | 100506874 | RNAseq | -0.8276 | 0.1214 | |
| SRP193095 | LINC00933 | 100506874 | RNAseq | -0.1938 | 0.1956 | |
| SRP219564 | LINC00933 | 100506874 | RNAseq | -1.0246 | 0.0096 |
Upregulated datasets: 0; Downregulated datasets: 1.
Copy number change of LINC00933:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00933 | 100506874 | 8 | 0 | 22 | |
| GSE20123 | LINC00933 | 100506874 | 8 | 0 | 22 | |
| GSE43470 | LINC00933 | 100506874 | 4 | 4 | 35 | |
| GSE46452 | LINC00933 | 100506874 | 3 | 7 | 49 | |
| GSE47630 | LINC00933 | 100506874 | 8 | 10 | 22 | |
| GSE54993 | LINC00933 | 100506874 | 5 | 6 | 59 | |
| GSE54994 | LINC00933 | 100506874 | 6 | 6 | 41 | |
| GSE60625 | LINC00933 | 100506874 | 4 | 0 | 7 | |
| GSE74703 | LINC00933 | 100506874 | 4 | 2 | 30 | |
| GSE74704 | LINC00933 | 100506874 | 4 | 0 | 16 | |
| TCGA | LINC00933 | 100506874 | 16 | 13 | 67 |
Total number of gains: 70; Total number of losses: 48; Total Number of normals: 370.
Somatic mutations of LINC00933:
Generating mutation plots.
Highly correlated genes for LINC00933:
Showing top 20/115 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00933 | ADD1 | 0.698588 | 3 | 0 | 3 |
| LINC00933 | DYNLRB2 | 0.689183 | 3 | 0 | 3 |
| LINC00933 | LIMCH1 | 0.663308 | 3 | 0 | 3 |
| LINC00933 | CRYZL1 | 0.654125 | 3 | 0 | 3 |
| LINC00933 | FYCO1 | 0.647396 | 5 | 0 | 4 |
| LINC00933 | WNT5B | 0.645246 | 4 | 0 | 4 |
| LINC00933 | NME5 | 0.629405 | 3 | 0 | 3 |
| LINC00933 | MSRB2 | 0.627388 | 4 | 0 | 4 |
| LINC00933 | PABPC5 | 0.625673 | 3 | 0 | 3 |
| LINC00933 | FBXL5 | 0.622497 | 4 | 0 | 4 |
| LINC00933 | ZNF844 | 0.621918 | 5 | 0 | 4 |
| LINC00933 | NFIA | 0.621778 | 4 | 0 | 3 |
| LINC00933 | CAPN7 | 0.616221 | 4 | 0 | 4 |
| LINC00933 | ATL1 | 0.615768 | 4 | 0 | 3 |
| LINC00933 | HIPK2 | 0.60922 | 4 | 0 | 3 |
| LINC00933 | PCYOX1 | 0.609159 | 4 | 0 | 3 |
| LINC00933 | ACYP2 | 0.604071 | 4 | 0 | 3 |
| LINC00933 | USP46 | 0.602943 | 3 | 0 | 3 |
| LINC00933 | LRRK2 | 0.601388 | 4 | 0 | 3 |
| LINC00933 | ZNF471 | 0.601003 | 5 | 0 | 3 |
For details and further investigation, click here
