| Full name: long intergenic non-protein coding RNA 960 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 3p12.3 | ||
| Entrez ID: 401074 | HGNC ID: HGNC:48710 | Ensembl Gene: ENSG00000242516 | OMIM ID: |
Expression of LINC00960:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00960 | 401074 | 1559827_at | -0.4734 | 0.8098 | |
| GSE26886 | LINC00960 | 401074 | 1559827_at | -0.8637 | 0.0885 | |
| GSE45670 | LINC00960 | 401074 | 1559827_at | -0.8499 | 0.0361 | |
| GSE53622 | LINC00960 | 401074 | 20106 | 0.1443 | 0.0777 | |
| GSE53624 | LINC00960 | 401074 | 20106 | 0.0440 | 0.5185 | |
| GSE63941 | LINC00960 | 401074 | 1559826_a_at | -1.6572 | 0.0744 | |
| GSE77861 | LINC00960 | 401074 | 1559827_at | -0.8020 | 0.0057 | |
| SRP007169 | LINC00960 | 401074 | RNAseq | -2.1088 | 0.0000 | |
| SRP064894 | LINC00960 | 401074 | RNAseq | -0.9166 | 0.0037 | |
| SRP133303 | LINC00960 | 401074 | RNAseq | -0.6123 | 0.0003 | |
| SRP159526 | LINC00960 | 401074 | RNAseq | -0.7335 | 0.0204 | |
| SRP193095 | LINC00960 | 401074 | RNAseq | -0.7543 | 0.0053 | |
| SRP219564 | LINC00960 | 401074 | RNAseq | -1.0915 | 0.1342 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by LINC00960 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00960:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00960 | 401074 | 2 | 18 | 10 | |
| GSE20123 | LINC00960 | 401074 | 2 | 18 | 10 | |
| GSE43470 | LINC00960 | 401074 | 0 | 20 | 23 | |
| GSE46452 | LINC00960 | 401074 | 2 | 17 | 40 | |
| GSE47630 | LINC00960 | 401074 | 1 | 23 | 16 | |
| GSE54993 | LINC00960 | 401074 | 4 | 3 | 63 | |
| GSE54994 | LINC00960 | 401074 | 1 | 31 | 21 | |
| GSE60625 | LINC00960 | 401074 | 3 | 1 | 7 | |
| GSE74703 | LINC00960 | 401074 | 0 | 17 | 19 | |
| GSE74704 | LINC00960 | 401074 | 1 | 13 | 6 | |
| TCGA | LINC00960 | 401074 | 1 | 78 | 17 |
Total number of gains: 17; Total number of losses: 239; Total Number of normals: 232.
Somatic mutations of LINC00960:
Generating mutation plots.
Highly correlated genes for LINC00960:
Showing top 20/116 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00960 | OPRL1 | 0.696656 | 3 | 0 | 3 |
| LINC00960 | NDFIP2 | 0.678981 | 3 | 0 | 3 |
| LINC00960 | EPB41L1 | 0.678655 | 3 | 0 | 3 |
| LINC00960 | PNPLA7 | 0.675005 | 3 | 0 | 3 |
| LINC00960 | MECOM | 0.665665 | 3 | 0 | 3 |
| LINC00960 | ZFAND2B | 0.661681 | 3 | 0 | 3 |
| LINC00960 | CLHC1 | 0.659656 | 3 | 0 | 3 |
| LINC00960 | STMN4 | 0.656256 | 3 | 0 | 3 |
| LINC00960 | PARD6G-AS1 | 0.655215 | 3 | 0 | 3 |
| LINC00960 | ZBTB46-AS1 | 0.649606 | 3 | 0 | 3 |
| LINC00960 | KLF17 | 0.646807 | 3 | 0 | 3 |
| LINC00960 | RAPGEF3 | 0.642344 | 4 | 0 | 4 |
| LINC00960 | EXOC1 | 0.639545 | 3 | 0 | 3 |
| LINC00960 | STARD7-AS1 | 0.637633 | 3 | 0 | 3 |
| LINC00960 | PRAP1 | 0.631618 | 3 | 0 | 3 |
| LINC00960 | PTN | 0.629604 | 3 | 0 | 3 |
| LINC00960 | ROBO2 | 0.629402 | 4 | 0 | 3 |
| LINC00960 | SHROOM3 | 0.628492 | 3 | 0 | 3 |
| LINC00960 | LINC00051 | 0.627414 | 4 | 0 | 4 |
| LINC00960 | SORBS2 | 0.625885 | 3 | 0 | 3 |
For details and further investigation, click here
