| Full name: long intergenic non-protein coding RNA 996 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 7q36.1 | ||
| Entrez ID: 285972 | HGNC ID: HGNC:27800 | Ensembl Gene: ENSG00000242258 | OMIM ID: |
Expression of LINC00996:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00996 | 285972 | 1560762_at | 0.0545 | 0.8920 | |
| GSE26886 | LINC00996 | 285972 | 1560762_at | -0.0637 | 0.5482 | |
| GSE45670 | LINC00996 | 285972 | 1560762_at | 0.1965 | 0.1621 | |
| GSE53622 | LINC00996 | 285972 | 64698 | 0.1867 | 0.0589 | |
| GSE53624 | LINC00996 | 285972 | 64698 | 0.0515 | 0.5873 | |
| GSE63941 | LINC00996 | 285972 | 1560762_at | 0.0468 | 0.7076 | |
| GSE77861 | LINC00996 | 285972 | 1560762_at | -0.0063 | 0.9590 | |
| SRP064894 | LINC00996 | 285972 | RNAseq | 0.7635 | 0.0059 | |
| SRP133303 | LINC00996 | 285972 | RNAseq | 0.3738 | 0.0962 | |
| SRP159526 | LINC00996 | 285972 | RNAseq | 0.2022 | 0.7601 | |
| SRP193095 | LINC00996 | 285972 | RNAseq | -0.0672 | 0.6794 | |
| SRP219564 | LINC00996 | 285972 | RNAseq | 0.8711 | 0.1134 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00996 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00996:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00996 | 285972 | 2 | 4 | 24 | |
| GSE20123 | LINC00996 | 285972 | 2 | 4 | 24 | |
| GSE43470 | LINC00996 | 285972 | 2 | 5 | 36 | |
| GSE46452 | LINC00996 | 285972 | 7 | 2 | 50 | |
| GSE47630 | LINC00996 | 285972 | 6 | 8 | 26 | |
| GSE54993 | LINC00996 | 285972 | 3 | 3 | 64 | |
| GSE54994 | LINC00996 | 285972 | 6 | 8 | 39 | |
| GSE60625 | LINC00996 | 285972 | 0 | 0 | 11 | |
| GSE74703 | LINC00996 | 285972 | 2 | 4 | 30 | |
| GSE74704 | LINC00996 | 285972 | 1 | 4 | 15 |
Total number of gains: 31; Total number of losses: 42; Total Number of normals: 319.
Somatic mutations of LINC00996:
Generating mutation plots.
Highly correlated genes for LINC00996:
Showing top 20/23 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00996 | RBM43 | 0.775253 | 3 | 0 | 3 |
| LINC00996 | PNMA3 | 0.677774 | 4 | 0 | 4 |
| LINC00996 | CLECL1 | 0.640657 | 5 | 0 | 4 |
| LINC00996 | JRK | 0.619472 | 3 | 0 | 3 |
| LINC00996 | PVRIG | 0.61619 | 3 | 0 | 3 |
| LINC00996 | ROR1-AS1 | 0.606501 | 3 | 0 | 3 |
| LINC00996 | PCSK1N | 0.600189 | 3 | 0 | 3 |
| LINC00996 | SLC25A53 | 0.595599 | 4 | 0 | 3 |
| LINC00996 | TSSK3 | 0.59026 | 5 | 0 | 5 |
| LINC00996 | SALL3 | 0.5894 | 3 | 0 | 3 |
| LINC00996 | UBASH3A | 0.589324 | 3 | 0 | 3 |
| LINC00996 | MS4A4A | 0.584403 | 3 | 0 | 3 |
| LINC00996 | FCRL1 | 0.583103 | 3 | 0 | 3 |
| LINC00996 | IKZF3 | 0.580498 | 4 | 0 | 3 |
| LINC00996 | ANKRD33B | 0.575092 | 3 | 0 | 3 |
| LINC00996 | SHISA8 | 0.573847 | 4 | 0 | 3 |
| LINC00996 | SORCS3 | 0.560747 | 3 | 0 | 3 |
| LINC00996 | ZEB1-AS1 | 0.560152 | 3 | 0 | 3 |
| LINC00996 | FCRL5 | 0.559516 | 4 | 0 | 3 |
| LINC00996 | LAT2 | 0.552226 | 6 | 0 | 4 |
For details and further investigation, click here
