| Full name: long intergenic non-protein coding RNA 1003 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 7q36.1 | ||
| Entrez ID: 100128822 | HGNC ID: HGNC:48957 | Ensembl Gene: ENSG00000261455 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC01003:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC01003 | 100128822 | 235174_s_at | -0.3362 | 0.6789 | |
| GSE26886 | LINC01003 | 100128822 | 235174_s_at | 0.0841 | 0.8828 | |
| GSE45670 | LINC01003 | 100128822 | 235174_s_at | -0.3399 | 0.3199 | |
| GSE53622 | LINC01003 | 100128822 | 58971 | -0.5791 | 0.0001 | |
| GSE53624 | LINC01003 | 100128822 | 58971 | -0.2128 | 0.0500 | |
| GSE63941 | LINC01003 | 100128822 | 235174_s_at | 0.6947 | 0.4573 | |
| GSE77861 | LINC01003 | 100128822 | 235174_s_at | -0.0998 | 0.8966 | |
| SRP007169 | LINC01003 | 100128822 | RNAseq | -0.8883 | 0.1412 | |
| SRP064894 | LINC01003 | 100128822 | RNAseq | -0.1931 | 0.3997 | |
| SRP133303 | LINC01003 | 100128822 | RNAseq | -0.0760 | 0.7803 | |
| SRP159526 | LINC01003 | 100128822 | RNAseq | -0.0417 | 0.9213 | |
| SRP193095 | LINC01003 | 100128822 | RNAseq | -0.1873 | 0.2422 | |
| SRP219564 | LINC01003 | 100128822 | RNAseq | -0.2751 | 0.5032 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC01003 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC01003:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC01003 | 100128822 | 2 | 4 | 24 | |
| GSE20123 | LINC01003 | 100128822 | 2 | 4 | 24 | |
| GSE43470 | LINC01003 | 100128822 | 2 | 5 | 36 | |
| GSE46452 | LINC01003 | 100128822 | 7 | 2 | 50 | |
| GSE47630 | LINC01003 | 100128822 | 6 | 9 | 25 | |
| GSE54993 | LINC01003 | 100128822 | 3 | 3 | 64 | |
| GSE54994 | LINC01003 | 100128822 | 6 | 8 | 39 | |
| GSE60625 | LINC01003 | 100128822 | 0 | 0 | 11 | |
| GSE74703 | LINC01003 | 100128822 | 2 | 4 | 30 | |
| GSE74704 | LINC01003 | 100128822 | 1 | 4 | 15 |
Total number of gains: 31; Total number of losses: 43; Total Number of normals: 318.
Somatic mutations of LINC01003:
Generating mutation plots.
Highly correlated genes for LINC01003:
Showing top 20/40 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC01003 | PAXIP1-AS1 | 0.68362 | 5 | 0 | 5 |
| LINC01003 | RMDN3 | 0.661188 | 3 | 0 | 3 |
| LINC01003 | ZSCAN32 | 0.645924 | 3 | 0 | 3 |
| LINC01003 | ATP6V0E2 | 0.628892 | 3 | 0 | 3 |
| LINC01003 | HOXB3 | 0.625333 | 4 | 0 | 3 |
| LINC01003 | NCOR1 | 0.609074 | 3 | 0 | 3 |
| LINC01003 | PPM1L | 0.596122 | 5 | 0 | 3 |
| LINC01003 | CRADD | 0.592946 | 4 | 0 | 3 |
| LINC01003 | GCNT2 | 0.589717 | 3 | 0 | 3 |
| LINC01003 | UNC50 | 0.587713 | 3 | 0 | 3 |
| LINC01003 | ATF1 | 0.587172 | 4 | 0 | 3 |
| LINC01003 | FAM76B | 0.580983 | 4 | 0 | 3 |
| LINC01003 | ZNF664 | 0.580511 | 5 | 0 | 3 |
| LINC01003 | SOCS2 | 0.570258 | 4 | 0 | 3 |
| LINC01003 | THAP9 | 0.567495 | 4 | 0 | 3 |
| LINC01003 | TTI2 | 0.564893 | 3 | 0 | 3 |
| LINC01003 | COLCA2 | 0.561577 | 4 | 0 | 3 |
| LINC01003 | NHS | 0.560777 | 4 | 0 | 3 |
| LINC01003 | KIAA0556 | 0.559778 | 4 | 0 | 3 |
| LINC01003 | F8 | 0.558367 | 4 | 0 | 3 |
For details and further investigation, click here
