| Full name: LSM8 homolog, U6 small nuclear RNA associated | Alias Symbol: YJR022W | ||
| Type: protein-coding gene | Cytoband: 7q31.31 | ||
| Entrez ID: 51691 | HGNC ID: HGNC:20471 | Ensembl Gene: ENSG00000128534 | OMIM ID: 607288 |
Expression of LSM8:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LSM8 | 51691 | 219119_at | 0.1402 | 0.7963 | |
| GSE20347 | LSM8 | 51691 | 219119_at | 0.5303 | 0.0045 | |
| GSE23400 | LSM8 | 51691 | 219119_at | 0.5525 | 0.0000 | |
| GSE26886 | LSM8 | 51691 | 219119_at | 1.0097 | 0.0000 | |
| GSE29001 | LSM8 | 51691 | 219119_at | 0.4821 | 0.0433 | |
| GSE38129 | LSM8 | 51691 | 219119_at | 0.6706 | 0.0000 | |
| GSE45670 | LSM8 | 51691 | 219119_at | 0.3936 | 0.0357 | |
| GSE63941 | LSM8 | 51691 | 219119_at | 0.3517 | 0.2936 | |
| GSE77861 | LSM8 | 51691 | 219119_at | 0.5405 | 0.0159 | |
| SRP007169 | LSM8 | 51691 | RNAseq | -0.0515 | 0.8779 | |
| SRP008496 | LSM8 | 51691 | RNAseq | 0.1467 | 0.4955 | |
| SRP064894 | LSM8 | 51691 | RNAseq | 0.2735 | 0.0464 | |
| SRP133303 | LSM8 | 51691 | RNAseq | 0.2073 | 0.2889 | |
| SRP159526 | LSM8 | 51691 | RNAseq | 0.1458 | 0.6013 | |
| SRP193095 | LSM8 | 51691 | RNAseq | -0.0842 | 0.4213 | |
| SRP219564 | LSM8 | 51691 | RNAseq | 0.2434 | 0.4520 |
Upregulated datasets: 1; Downregulated datasets: 0.
Copy number change of LSM8:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LSM8 | 51691 | 8 | 2 | 20 | |
| GSE20123 | LSM8 | 51691 | 9 | 2 | 19 | |
| GSE43470 | LSM8 | 51691 | 4 | 2 | 37 | |
| GSE46452 | LSM8 | 51691 | 8 | 1 | 50 | |
| GSE47630 | LSM8 | 51691 | 7 | 4 | 29 | |
| GSE54993 | LSM8 | 51691 | 2 | 7 | 61 | |
| GSE54994 | LSM8 | 51691 | 12 | 5 | 36 | |
| GSE60625 | LSM8 | 51691 | 0 | 0 | 11 | |
| GSE74703 | LSM8 | 51691 | 4 | 2 | 30 | |
| GSE74704 | LSM8 | 51691 | 6 | 2 | 12 |
Total number of gains: 60; Total number of losses: 27; Total Number of normals: 305.
Somatic mutations of LSM8:
Generating mutation plots.
Highly correlated genes for LSM8:
Showing top 20/971 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LSM8 | KLHL13 | 0.726001 | 3 | 0 | 3 |
| LSM8 | DBF4 | 0.723666 | 8 | 0 | 8 |
| LSM8 | LSM7 | 0.710476 | 8 | 0 | 7 |
| LSM8 | MRPL4 | 0.709175 | 6 | 0 | 6 |
| LSM8 | LSM5 | 0.697625 | 7 | 0 | 6 |
| LSM8 | CCDC77 | 0.695716 | 3 | 0 | 3 |
| LSM8 | MRPL47 | 0.695166 | 3 | 0 | 3 |
| LSM8 | CMC2 | 0.689408 | 7 | 0 | 7 |
| LSM8 | ZFP69 | 0.687029 | 3 | 0 | 3 |
| LSM8 | KNSTRN | 0.686359 | 3 | 0 | 3 |
| LSM8 | CBX3 | 0.684445 | 8 | 0 | 7 |
| LSM8 | SLC25A19 | 0.683657 | 3 | 0 | 3 |
| LSM8 | BOLA3 | 0.68123 | 3 | 0 | 3 |
| LSM8 | C5orf34 | 0.680841 | 3 | 0 | 3 |
| LSM8 | BAALC | 0.679428 | 3 | 0 | 3 |
| LSM8 | SHPRH | 0.678208 | 3 | 0 | 3 |
| LSM8 | GOLM1 | 0.677972 | 5 | 0 | 5 |
| LSM8 | PHLDB2 | 0.676111 | 3 | 0 | 3 |
| LSM8 | IFT22 | 0.67448 | 3 | 0 | 3 |
| LSM8 | SNRPG | 0.671582 | 7 | 0 | 7 |
For details and further investigation, click here