LSM8

 

Full name: LSM8 homolog, U6 small nuclear RNA associated Alias Symbol: YJR022W
Type: protein-coding gene Cytoband: 7q31.31
Entrez ID: 51691 HGNC ID: HGNC:20471 Ensembl Gene: ENSG00000128534 OMIM ID: 607288

 

Expression of LSM8:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LSM8 51691 219119_at 0.1402 0.7963
GSE20347 LSM8 51691 219119_at 0.5303 0.0045
GSE23400 LSM8 51691 219119_at 0.5525 0.0000
GSE26886 LSM8 51691 219119_at 1.0097 0.0000
GSE29001 LSM8 51691 219119_at 0.4821 0.0433
GSE38129 LSM8 51691 219119_at 0.6706 0.0000
GSE45670 LSM8 51691 219119_at 0.3936 0.0357
GSE63941 LSM8 51691 219119_at 0.3517 0.2936
GSE77861 LSM8 51691 219119_at 0.5405 0.0159
SRP007169 LSM8 51691 RNAseq -0.0515 0.8779
SRP008496 LSM8 51691 RNAseq 0.1467 0.4955
SRP064894 LSM8 51691 RNAseq 0.2735 0.0464
SRP133303 LSM8 51691 RNAseq 0.2073 0.2889
SRP159526 LSM8 51691 RNAseq 0.1458 0.6013
SRP193095 LSM8 51691 RNAseq -0.0842 0.4213
SRP219564 LSM8 51691 RNAseq 0.2434 0.4520

Upregulated datasets: 1; Downregulated datasets: 0.  


 

Copy number change of LSM8:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LSM8 51691 8 2 20
GSE20123 LSM8 51691 9 2 19
GSE43470 LSM8 51691 4 2 37
GSE46452 LSM8 51691 8 1 50
GSE47630 LSM8 51691 7 4 29
GSE54993 LSM8 51691 2 7 61
GSE54994 LSM8 51691 12 5 36
GSE60625 LSM8 51691 0 0 11
GSE74703 LSM8 51691 4 2 30
GSE74704 LSM8 51691 6 2 12

Total number of gains: 60; Total number of losses: 27; Total Number of normals: 305.  


 

Somatic mutations of LSM8:

 

Generating mutation plots.

 

Highly correlated genes for LSM8:

 

Showing top 20/971 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LSM8KLHL130.726001303
LSM8DBF40.723666808
LSM8LSM70.710476807
LSM8MRPL40.709175606
LSM8LSM50.697625706
LSM8CCDC770.695716303
LSM8MRPL470.695166303
LSM8CMC20.689408707
LSM8ZFP690.687029303
LSM8KNSTRN0.686359303
LSM8CBX30.684445807
LSM8SLC25A190.683657303
LSM8BOLA30.68123303
LSM8C5orf340.680841303
LSM8BAALC0.679428303
LSM8SHPRH0.678208303
LSM8GOLM10.677972505
LSM8PHLDB20.676111303
LSM8IFT220.67448303
LSM8SNRPG0.671582707

For details and further investigation, click here