| Full name: LysM domain containing 1 | Alias Symbol: SB145|MGC35223|RP11-68I18.5 | ||
| Type: protein-coding gene | Cytoband: 1q21.3 | ||
| Entrez ID: 388695 | HGNC ID: HGNC:32070 | Ensembl Gene: ENSG00000163155 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LYSMD1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LYSMD1 | 388695 | 232283_at | 0.2406 | 0.3246 | |
| GSE26886 | LYSMD1 | 388695 | 232283_at | 0.2405 | 0.1849 | |
| GSE45670 | LYSMD1 | 388695 | 232283_at | 0.2708 | 0.1151 | |
| GSE53622 | LYSMD1 | 388695 | 29343 | 0.0609 | 0.5093 | |
| GSE53624 | LYSMD1 | 388695 | 29343 | 0.2581 | 0.0007 | |
| GSE63941 | LYSMD1 | 388695 | 232283_at | 0.9142 | 0.0341 | |
| GSE77861 | LYSMD1 | 388695 | 232283_at | -0.0052 | 0.9868 | |
| GSE97050 | LYSMD1 | 388695 | A_23_P430381 | -0.1334 | 0.5391 | |
| SRP007169 | LYSMD1 | 388695 | RNAseq | -0.3776 | 0.4948 | |
| SRP008496 | LYSMD1 | 388695 | RNAseq | -0.1019 | 0.7919 | |
| SRP064894 | LYSMD1 | 388695 | RNAseq | 0.3103 | 0.0814 | |
| SRP133303 | LYSMD1 | 388695 | RNAseq | 0.1279 | 0.5629 | |
| SRP159526 | LYSMD1 | 388695 | RNAseq | 0.8858 | 0.0015 | |
| SRP193095 | LYSMD1 | 388695 | RNAseq | 0.1419 | 0.2772 | |
| SRP219564 | LYSMD1 | 388695 | RNAseq | 0.1340 | 0.6426 | |
| TCGA | LYSMD1 | 388695 | RNAseq | 0.0367 | 0.6007 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LYSMD1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of LYSMD1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LYSMD1 | 388695 | 14 | 0 | 16 | |
| GSE20123 | LYSMD1 | 388695 | 14 | 0 | 16 | |
| GSE43470 | LYSMD1 | 388695 | 6 | 1 | 36 | |
| GSE46452 | LYSMD1 | 388695 | 2 | 1 | 56 | |
| GSE47630 | LYSMD1 | 388695 | 14 | 0 | 26 | |
| GSE54993 | LYSMD1 | 388695 | 0 | 4 | 66 | |
| GSE54994 | LYSMD1 | 388695 | 15 | 0 | 38 | |
| GSE60625 | LYSMD1 | 388695 | 0 | 0 | 11 | |
| GSE74703 | LYSMD1 | 388695 | 6 | 1 | 29 | |
| GSE74704 | LYSMD1 | 388695 | 7 | 0 | 13 | |
| TCGA | LYSMD1 | 388695 | 37 | 2 | 57 |
Total number of gains: 115; Total number of losses: 9; Total Number of normals: 364.
Somatic mutations of LYSMD1:
Generating mutation plots.
Highly correlated genes for LYSMD1:
Showing top 20/203 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LYSMD1 | WWP1 | 0.808719 | 3 | 0 | 3 |
| LYSMD1 | MYLIP | 0.768941 | 3 | 0 | 3 |
| LYSMD1 | CHD8 | 0.759854 | 3 | 0 | 3 |
| LYSMD1 | OTUD6B | 0.743706 | 3 | 0 | 3 |
| LYSMD1 | TRMT12 | 0.739878 | 3 | 0 | 3 |
| LYSMD1 | LCE1E | 0.737174 | 3 | 0 | 3 |
| LYSMD1 | SLC2A4RG | 0.733985 | 3 | 0 | 3 |
| LYSMD1 | TUBGCP4 | 0.732144 | 3 | 0 | 3 |
| LYSMD1 | NUFIP2 | 0.729845 | 3 | 0 | 3 |
| LYSMD1 | PER2 | 0.727449 | 3 | 0 | 3 |
| LYSMD1 | ZNF300 | 0.725989 | 3 | 0 | 3 |
| LYSMD1 | C20orf96 | 0.72227 | 3 | 0 | 3 |
| LYSMD1 | ZNF124 | 0.716581 | 3 | 0 | 3 |
| LYSMD1 | CDCA7 | 0.716039 | 3 | 0 | 3 |
| LYSMD1 | ZNF354C | 0.715988 | 3 | 0 | 3 |
| LYSMD1 | HEATR6 | 0.713428 | 3 | 0 | 3 |
| LYSMD1 | UHMK1 | 0.712344 | 3 | 0 | 3 |
| LYSMD1 | CCDC18 | 0.709667 | 3 | 0 | 3 |
| LYSMD1 | EWSR1 | 0.704128 | 3 | 0 | 3 |
| LYSMD1 | ATF6 | 0.702017 | 3 | 0 | 3 |
For details and further investigation, click here
