NKD2

 

Full name: NKD inhibitor of WNT signaling pathway 2 Alias Symbol: Naked2
Type: protein-coding gene Cytoband: 5p15.33
Entrez ID: 85409 HGNC ID: HGNC:17046 Ensembl Gene: ENSG00000145506 OMIM ID: 607852
Drug and gene relationship at DGIdb

 

NKD2 involved pathways:

KEGG pathway Description View
hsa04310Wnt signaling pathway

 

Expression of NKD2:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 NKD2 85409 232201_at 0.0647 0.9272
GSE26886 NKD2 85409 232201_at 0.5934 0.0005
GSE45670 NKD2 85409 232201_at 0.2774 0.1513
GSE53622 NKD2 85409 48197 0.9599 0.0000
GSE53624 NKD2 85409 48197 1.2266 0.0000
GSE63941 NKD2 85409 232201_at -0.9182 0.0021
GSE77861 NKD2 85409 232201_at 0.4587 0.0554
GSE97050 NKD2 85409 A_33_P3252954 -0.2692 0.2966
SRP007169 NKD2 85409 RNAseq 2.3016 0.0000
SRP008496 NKD2 85409 RNAseq 2.5208 0.0000
SRP064894 NKD2 85409 RNAseq 0.2333 0.5304
SRP133303 NKD2 85409 RNAseq 0.2972 0.2482
SRP159526 NKD2 85409 RNAseq 1.8370 0.0001
SRP219564 NKD2 85409 RNAseq 0.8673 0.0255
TCGA NKD2 85409 RNAseq 1.0713 0.0000

Upregulated datasets: 5; Downregulated datasets: 0.  


 

Survival by NKD2 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of NKD2:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 NKD2 85409 13 1 16
GSE20123 NKD2 85409 13 1 16
GSE43470 NKD2 85409 17 1 25
GSE46452 NKD2 85409 6 22 31
GSE47630 NKD2 85409 7 11 22
GSE54993 NKD2 85409 5 5 60
GSE54994 NKD2 85409 29 1 23
GSE60625 NKD2 85409 0 0 11
GSE74703 NKD2 85409 14 0 22
GSE74704 NKD2 85409 11 0 9
TCGA NKD2 85409 61 3 32

Total number of gains: 176; Total number of losses: 45; Total Number of normals: 267.  


 

Somatic mutations of NKD2:

 

Generating mutation plots.

 

Highly correlated genes for NKD2:

 

Showing top 20/76 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
NKD2FFAR10.760563303
NKD2GJD40.730617303
NKD2JSRP10.708101303
NKD2PSTPIP10.686281303
NKD2HSD17B140.680403303
NKD2MEPE0.67553303
NKD2ASPHD10.670113303
NKD2BATF0.668745303
NKD2TBX20.664383504
NKD2ARID3A0.661356404
NKD2NPW0.651801403
NKD2DAB10.641143303
NKD2TMEM151B0.638124403
NKD2SNAI20.637721303
NKD2TNNI10.633524303
NKD2ST200.627421403
NKD2GGTLC10.623211303
NKD2ADAMTS20.622795605
NKD2YPEL40.6185403
NKD2KAZALD10.60982505

For details and further investigation, click here