| Full name: RNA binding motif protein 48 | Alias Symbol: DKFZp564O0523|HSPC304 | ||
| Type: protein-coding gene | Cytoband: 7q21.2 | ||
| Entrez ID: 84060 | HGNC ID: HGNC:21785 | Ensembl Gene: ENSG00000127993 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Screen Evidence:
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Expression of RBM48:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RBM48 | 84060 | 221596_s_at | -0.1170 | 0.8833 | |
| GSE20347 | RBM48 | 84060 | 221596_s_at | 0.0641 | 0.7865 | |
| GSE23400 | RBM48 | 84060 | 221594_at | -0.1372 | 0.0002 | |
| GSE26886 | RBM48 | 84060 | 221595_at | -0.5629 | 0.0826 | |
| GSE29001 | RBM48 | 84060 | 221596_s_at | -0.2017 | 0.5911 | |
| GSE38129 | RBM48 | 84060 | 221596_s_at | 0.1137 | 0.5329 | |
| GSE45670 | RBM48 | 84060 | 221596_s_at | 0.3403 | 0.2059 | |
| GSE53622 | RBM48 | 84060 | 137801 | 0.2988 | 0.0003 | |
| GSE53624 | RBM48 | 84060 | 137801 | -0.0064 | 0.9469 | |
| GSE63941 | RBM48 | 84060 | 221596_s_at | 0.6249 | 0.2973 | |
| GSE77861 | RBM48 | 84060 | 221596_s_at | 0.1868 | 0.4057 | |
| SRP007169 | RBM48 | 84060 | RNAseq | 0.6784 | 0.2243 | |
| SRP008496 | RBM48 | 84060 | RNAseq | 0.2580 | 0.4689 | |
| SRP064894 | RBM48 | 84060 | RNAseq | -0.0042 | 0.9780 | |
| SRP133303 | RBM48 | 84060 | RNAseq | 0.4843 | 0.0166 | |
| SRP159526 | RBM48 | 84060 | RNAseq | -0.0843 | 0.6536 | |
| SRP193095 | RBM48 | 84060 | RNAseq | 0.3629 | 0.0118 | |
| SRP219564 | RBM48 | 84060 | RNAseq | 0.1853 | 0.5527 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by RBM48 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of RBM48:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RBM48 | 84060 | 13 | 0 | 17 | |
| GSE20123 | RBM48 | 84060 | 13 | 0 | 17 | |
| GSE43470 | RBM48 | 84060 | 7 | 1 | 35 | |
| GSE46452 | RBM48 | 84060 | 11 | 0 | 48 | |
| GSE47630 | RBM48 | 84060 | 9 | 2 | 29 | |
| GSE54993 | RBM48 | 84060 | 1 | 9 | 60 | |
| GSE54994 | RBM48 | 84060 | 16 | 2 | 35 | |
| GSE60625 | RBM48 | 84060 | 0 | 0 | 11 | |
| GSE74703 | RBM48 | 84060 | 6 | 1 | 29 | |
| GSE74704 | RBM48 | 84060 | 9 | 0 | 11 | |
| TCGA | RBM48 | 84060 | 56 | 4 | 36 |
Total number of gains: 141; Total number of losses: 19; Total Number of normals: 328.
Somatic mutations of RBM48:
Generating mutation plots.
Highly correlated genes for RBM48:
Showing top 20/51 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RBM48 | KRIT1 | 0.722867 | 7 | 0 | 6 |
| RBM48 | LANCL1 | 0.661145 | 3 | 0 | 3 |
| RBM48 | ANKIB1 | 0.641903 | 6 | 0 | 5 |
| RBM48 | COG5 | 0.636839 | 3 | 0 | 3 |
| RBM48 | ZW10 | 0.623136 | 4 | 0 | 3 |
| RBM48 | CAMK1G | 0.613779 | 3 | 0 | 3 |
| RBM48 | PAWR | 0.60793 | 3 | 0 | 3 |
| RBM48 | LARP4B | 0.604961 | 4 | 0 | 3 |
| RBM48 | NAA25 | 0.602635 | 3 | 0 | 3 |
| RBM48 | PEX1 | 0.596667 | 8 | 0 | 7 |
| RBM48 | FOPNL | 0.58889 | 3 | 0 | 3 |
| RBM48 | VPS26A | 0.588641 | 4 | 0 | 3 |
| RBM48 | ACTR10 | 0.584015 | 4 | 0 | 3 |
| RBM48 | CMTR2 | 0.583803 | 3 | 0 | 3 |
| RBM48 | ERI2 | 0.582102 | 4 | 0 | 3 |
| RBM48 | SCO1 | 0.58122 | 3 | 0 | 3 |
| RBM48 | ZNF3 | 0.5789 | 4 | 0 | 3 |
| RBM48 | SUPT4H1 | 0.575105 | 3 | 0 | 3 |
| RBM48 | EAPP | 0.575089 | 3 | 0 | 3 |
| RBM48 | SPTY2D1 | 0.574009 | 3 | 0 | 3 |
For details and further investigation, click here
