| Full name: ring finger protein 17 | Alias Symbol: Mmip-2|SPATA23|FLJ11045 | ||
| Type: protein-coding gene | Cytoband: 13q12.12 | ||
| Entrez ID: 56163 | HGNC ID: HGNC:10060 | Ensembl Gene: ENSG00000132972 | OMIM ID: 605793 |
| Drug and gene relationship at DGIdb | |||
Expression of RNF17:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE20347 | RNF17 | 56163 | 221033_s_at | -0.0170 | 0.8821 | |
| GSE23400 | RNF17 | 56163 | 220270_at | -0.1704 | 0.0001 | |
| GSE29001 | RNF17 | 56163 | 221033_s_at | -0.1499 | 0.3305 | |
| GSE38129 | RNF17 | 56163 | 221033_s_at | -0.1170 | 0.1349 | |
| GSE53622 | RNF17 | 56163 | 80429 | 0.3722 | 0.0372 | |
| GSE53624 | RNF17 | 56163 | 80429 | 0.3817 | 0.0000 | |
| GSE97050 | RNF17 | 56163 | A_23_P99373 | 0.3343 | 0.3345 | |
| TCGA | RNF17 | 56163 | RNAseq | 3.1592 | 0.0089 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by RNF17 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RNF17:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RNF17 | 56163 | 1 | 12 | 17 | |
| GSE20123 | RNF17 | 56163 | 1 | 11 | 18 | |
| GSE43470 | RNF17 | 56163 | 2 | 13 | 28 | |
| GSE46452 | RNF17 | 56163 | 0 | 33 | 26 | |
| GSE47630 | RNF17 | 56163 | 3 | 26 | 11 | |
| GSE54993 | RNF17 | 56163 | 11 | 2 | 57 | |
| GSE54994 | RNF17 | 56163 | 1 | 13 | 39 | |
| GSE60625 | RNF17 | 56163 | 0 | 3 | 8 | |
| GSE74703 | RNF17 | 56163 | 2 | 10 | 24 | |
| GSE74704 | RNF17 | 56163 | 0 | 9 | 11 | |
| TCGA | RNF17 | 56163 | 5 | 46 | 45 |
Total number of gains: 26; Total number of losses: 178; Total Number of normals: 284.
Somatic mutations of RNF17:
Generating mutation plots.
Highly correlated genes for RNF17:
Showing top 20/849 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RNF17 | LRTM1 | 0.783146 | 5 | 0 | 5 |
| RNF17 | OBSL1 | 0.78102 | 3 | 0 | 3 |
| RNF17 | CPA2 | 0.763771 | 3 | 0 | 3 |
| RNF17 | PTPRN2 | 0.76203 | 4 | 0 | 4 |
| RNF17 | OR6A2 | 0.76015 | 4 | 0 | 4 |
| RNF17 | LIMD1 | 0.758679 | 3 | 0 | 3 |
| RNF17 | KIR3DL3 | 0.755305 | 5 | 0 | 5 |
| RNF17 | SLC5A4 | 0.751075 | 5 | 0 | 5 |
| RNF17 | KIR2DS5 | 0.74759 | 4 | 0 | 4 |
| RNF17 | REG3A | 0.743489 | 4 | 0 | 4 |
| RNF17 | SLC9A7 | 0.741167 | 3 | 0 | 3 |
| RNF17 | IFNA4 | 0.739791 | 5 | 0 | 5 |
| RNF17 | LUZP4 | 0.736471 | 4 | 0 | 4 |
| RNF17 | PAX3 | 0.736144 | 4 | 0 | 4 |
| RNF17 | ERN1 | 0.735158 | 4 | 0 | 4 |
| RNF17 | FOXN3-AS2 | 0.734241 | 4 | 0 | 4 |
| RNF17 | APOM | 0.734117 | 3 | 0 | 3 |
| RNF17 | AZU1 | 0.733878 | 3 | 0 | 3 |
| RNF17 | ACKR2 | 0.733826 | 3 | 0 | 3 |
| RNF17 | GJA3 | 0.733617 | 3 | 0 | 3 |
For details and further investigation, click here
