| Full name: ring finger protein 40 | Alias Symbol: KIAA0661|RBP95|BRE1B|STARING | ||
| Type: protein-coding gene | Cytoband: 16p11.2 | ||
| Entrez ID: 9810 | HGNC ID: HGNC:16867 | Ensembl Gene: ENSG00000103549 | OMIM ID: 607700 |
Screen Evidence:
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Expression of RNF40:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RNF40 | 9810 | 206845_s_at | 0.3353 | 0.4581 | |
| GSE20347 | RNF40 | 9810 | 206845_s_at | -0.0170 | 0.8889 | |
| GSE23400 | RNF40 | 9810 | 206845_s_at | 0.0665 | 0.1762 | |
| GSE26886 | RNF40 | 9810 | 206845_s_at | -0.2684 | 0.0396 | |
| GSE29001 | RNF40 | 9810 | 206845_s_at | 0.0266 | 0.8808 | |
| GSE38129 | RNF40 | 9810 | 206845_s_at | 0.0412 | 0.6456 | |
| GSE45670 | RNF40 | 9810 | 206845_s_at | 0.3042 | 0.0122 | |
| GSE63941 | RNF40 | 9810 | 206845_s_at | 0.4813 | 0.0779 | |
| GSE77861 | RNF40 | 9810 | 206845_s_at | 0.0110 | 0.9671 | |
| GSE97050 | RNF40 | 9810 | A_23_P364890 | 0.6020 | 0.1297 | |
| SRP007169 | RNF40 | 9810 | RNAseq | 1.1159 | 0.0268 | |
| SRP008496 | RNF40 | 9810 | RNAseq | 0.8636 | 0.0068 | |
| SRP064894 | RNF40 | 9810 | RNAseq | 0.1154 | 0.3886 | |
| SRP133303 | RNF40 | 9810 | RNAseq | 0.3695 | 0.0151 | |
| SRP159526 | RNF40 | 9810 | RNAseq | 0.2097 | 0.3971 | |
| SRP193095 | RNF40 | 9810 | RNAseq | 0.2258 | 0.0075 | |
| SRP219564 | RNF40 | 9810 | RNAseq | 0.2951 | 0.1528 | |
| TCGA | RNF40 | 9810 | RNAseq | 0.0715 | 0.0996 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by RNF40 expression:
 |
| TCGA |
Note: Click image to view full size file.
Copy number change of RNF40:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RNF40 | 9810 | 5 | 5 | 20 | |
| GSE20123 | RNF40 | 9810 | 5 | 4 | 21 | |
| GSE43470 | RNF40 | 9810 | 3 | 3 | 37 | |
| GSE46452 | RNF40 | 9810 | 38 | 1 | 20 | |
| GSE47630 | RNF40 | 9810 | 11 | 7 | 22 | |
| GSE54993 | RNF40 | 9810 | 2 | 5 | 63 | |
| GSE54994 | RNF40 | 9810 | 5 | 9 | 39 | |
| GSE60625 | RNF40 | 9810 | 4 | 0 | 7 | |
| GSE74703 | RNF40 | 9810 | 3 | 2 | 31 | |
| GSE74704 | RNF40 | 9810 | 3 | 2 | 15 | |
| TCGA | RNF40 | 9810 | 20 | 10 | 66 |
Total number of gains: 99; Total number of losses: 48; Total Number of normals: 341.
Somatic mutations of RNF40:
Generating mutation plots.
Highly correlated genes for RNF40:
Showing top 20/397 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RNF40 | TBX1 | 0.788002 | 3 | 0 | 3 |
| RNF40 | FBXL19 | 0.751109 | 5 | 0 | 5 |
| RNF40 | SENP2 | 0.743677 | 3 | 0 | 3 |
| RNF40 | NOP10 | 0.741614 | 3 | 0 | 3 |
| RNF40 | CRKL | 0.73574 | 3 | 0 | 3 |
| RNF40 | LSM10 | 0.73525 | 3 | 0 | 3 |
| RNF40 | PIP4K2C | 0.734154 | 4 | 0 | 4 |
| RNF40 | RNF26 | 0.731339 | 3 | 0 | 3 |
| RNF40 | CSF2RA | 0.725643 | 3 | 0 | 3 |
| RNF40 | LAMTOR1 | 0.719025 | 3 | 0 | 3 |
| RNF40 | SNX15 | 0.716597 | 3 | 0 | 3 |
| RNF40 | HIVEP1 | 0.707958 | 3 | 0 | 3 |
| RNF40 | COMMD2 | 0.706309 | 3 | 0 | 3 |
| RNF40 | TADA3 | 0.70477 | 3 | 0 | 3 |
| RNF40 | POLD4 | 0.699863 | 3 | 0 | 3 |
| RNF40 | HOXA7 | 0.698668 | 3 | 0 | 3 |
| RNF40 | ZNF467 | 0.697274 | 3 | 0 | 3 |
| RNF40 | IMPDH1 | 0.694713 | 3 | 0 | 3 |
| RNF40 | STAU1 | 0.692739 | 3 | 0 | 3 |
| RNF40 | PDLIM1 | 0.690709 | 3 | 0 | 3 |
For details and further investigation, click here
