| Full name: SH3RF3 antisense RNA 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 2q13 | ||
| Entrez ID: 100287216 | HGNC ID: HGNC:44168 | Ensembl Gene: ENSG00000259863 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of SH3RF3-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SH3RF3-AS1 | 100287216 | 233512_at | 0.1179 | 0.5638 | |
| GSE26886 | SH3RF3-AS1 | 100287216 | 233512_at | 0.0802 | 0.4326 | |
| GSE45670 | SH3RF3-AS1 | 100287216 | 233512_at | -0.0440 | 0.7174 | |
| GSE53622 | SH3RF3-AS1 | 100287216 | 77861 | 0.2699 | 0.0554 | |
| GSE53624 | SH3RF3-AS1 | 100287216 | 77861 | 0.2874 | 0.0681 | |
| GSE63941 | SH3RF3-AS1 | 100287216 | 233512_at | -1.2665 | 0.0000 | |
| GSE77861 | SH3RF3-AS1 | 100287216 | 233512_at | -0.0391 | 0.6264 | |
| SRP133303 | SH3RF3-AS1 | 100287216 | RNAseq | 0.4339 | 0.1892 | |
| SRP159526 | SH3RF3-AS1 | 100287216 | RNAseq | 0.2654 | 0.4704 | |
| SRP193095 | SH3RF3-AS1 | 100287216 | RNAseq | 0.7949 | 0.0000 | |
| SRP219564 | SH3RF3-AS1 | 100287216 | RNAseq | 0.8336 | 0.1096 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by SH3RF3-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SH3RF3-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SH3RF3-AS1 | 100287216 | 4 | 2 | 24 | |
| GSE20123 | SH3RF3-AS1 | 100287216 | 4 | 2 | 24 | |
| GSE43470 | SH3RF3-AS1 | 100287216 | 3 | 1 | 39 | |
| GSE46452 | SH3RF3-AS1 | 100287216 | 1 | 4 | 54 | |
| GSE47630 | SH3RF3-AS1 | 100287216 | 7 | 0 | 33 | |
| GSE54993 | SH3RF3-AS1 | 100287216 | 0 | 6 | 64 | |
| GSE54994 | SH3RF3-AS1 | 100287216 | 10 | 0 | 43 | |
| GSE60625 | SH3RF3-AS1 | 100287216 | 0 | 3 | 8 | |
| GSE74703 | SH3RF3-AS1 | 100287216 | 3 | 1 | 32 | |
| GSE74704 | SH3RF3-AS1 | 100287216 | 2 | 2 | 16 |
Total number of gains: 34; Total number of losses: 21; Total Number of normals: 337.
Somatic mutations of SH3RF3-AS1:
Generating mutation plots.
Highly correlated genes for SH3RF3-AS1:
Showing top 20/21 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SH3RF3-AS1 | A1BG-AS1 | 0.733774 | 3 | 0 | 3 |
| SH3RF3-AS1 | TRAM1 | 0.653824 | 3 | 0 | 3 |
| SH3RF3-AS1 | STT3A | 0.637475 | 3 | 0 | 3 |
| SH3RF3-AS1 | TMEM176B | 0.633168 | 3 | 0 | 3 |
| SH3RF3-AS1 | PALM2 | 0.626545 | 3 | 0 | 3 |
| SH3RF3-AS1 | SPATA9 | 0.609882 | 4 | 0 | 3 |
| SH3RF3-AS1 | ADAM12 | 0.608064 | 3 | 0 | 3 |
| SH3RF3-AS1 | RFX4 | 0.607426 | 3 | 0 | 3 |
| SH3RF3-AS1 | CCR8 | 0.593771 | 3 | 0 | 3 |
| SH3RF3-AS1 | SUSD5 | 0.587059 | 4 | 0 | 3 |
| SH3RF3-AS1 | UXS1 | 0.58505 | 4 | 0 | 3 |
| SH3RF3-AS1 | IL21R | 0.584618 | 3 | 0 | 3 |
| SH3RF3-AS1 | SULT1C4 | 0.581158 | 3 | 0 | 3 |
| SH3RF3-AS1 | GPR65 | 0.579935 | 3 | 0 | 3 |
| SH3RF3-AS1 | NFE4 | 0.5714 | 3 | 0 | 3 |
| SH3RF3-AS1 | KCTD17 | 0.54576 | 4 | 0 | 3 |
| SH3RF3-AS1 | C17orf67 | 0.545098 | 4 | 0 | 3 |
| SH3RF3-AS1 | MAGEE1 | 0.535558 | 3 | 0 | 3 |
| SH3RF3-AS1 | LIF | 0.516621 | 4 | 0 | 3 |
| SH3RF3-AS1 | SLC22A4 | 0.512224 | 5 | 0 | 3 |
For details and further investigation, click here
