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File: /data/webapp/var/www/html/ESCCdb/application/controllers/Result_pages.php
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Multi-Omics Database of ESCC

 

SHANK2-AS3

 

Full name: SHANK2 antisense RNA 3 Alias Symbol: 
Type: non-coding RNA Cytoband: 11q13.4
Entrez ID: 220070 HGNC ID: HGNC:25098 Ensembl Gene: ENSG00000171671 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of SHANK2-AS3:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 SHANK2-AS3 220070 224139_at 0.0456 0.8651
GSE26886 SHANK2-AS3 220070 224139_at -0.0143 0.8867
GSE45670 SHANK2-AS3 220070 224139_at 0.0509 0.4849
GSE53622 SHANK2-AS3 220070 547 0.1031 0.2215
GSE53624 SHANK2-AS3 220070 547 0.0661 0.5265
GSE63941 SHANK2-AS3 220070 224139_at 0.1465 0.2195
GSE77861 SHANK2-AS3 220070 224139_at -0.0165 0.9006
SRP133303 SHANK2-AS3 220070 RNAseq 0.5993 0.0010
SRP159526 SHANK2-AS3 220070 RNAseq 0.8564 0.1067
SRP193095 SHANK2-AS3 220070 RNAseq 0.4159 0.0213
SRP219564 SHANK2-AS3 220070 RNAseq 0.1640 0.6812

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by SHANK2-AS3 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of SHANK2-AS3:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SHANK2-AS3 220070 14 4 12
GSE20123 SHANK2-AS3 220070 14 4 12
GSE43470 SHANK2-AS3 220070 9 4 30
GSE46452 SHANK2-AS3 220070 24 7 28
GSE47630 SHANK2-AS3 220070 14 7 19
GSE54993 SHANK2-AS3 220070 2 17 51
GSE54994 SHANK2-AS3 220070 18 10 25
GSE60625 SHANK2-AS3 220070 0 8 3
GSE74703 SHANK2-AS3 220070 7 3 26
GSE74704 SHANK2-AS3 220070 10 2 8

Total number of gains: 112; Total number of losses: 66; Total Number of normals: 214.  

 

Somatic mutations of SHANK2-AS3:

 

Generating mutation plots.

 

Highly correlated genes for SHANK2-AS3:

 

Showing top 20/84 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SHANK2-AS3LINC005980.743986303
SHANK2-AS3LINC004750.715236303
SHANK2-AS3KCP0.713519303
SHANK2-AS3AGXT0.699333303
SHANK2-AS3CYP11B20.696036303
SHANK2-AS3CREB3L30.677756303
SHANK2-AS3SLC25A530.666163303
SHANK2-AS3SOX30.663397303
SHANK2-AS3STMN40.661323404
SHANK2-AS3HMX10.660861404
SHANK2-AS3EDA0.659967303
SHANK2-AS3KCNH30.654208303
SHANK2-AS3RIMBP20.65033303
SHANK2-AS3KLF160.64656504
SHANK2-AS3SEMA6C0.644595403
SHANK2-AS3KCTD190.637004303
SHANK2-AS3TNNI20.634454303
SHANK2-AS3NYX0.630364404
SHANK2-AS3UTF10.626067404
SHANK2-AS3RSPH90.624726303

For details and further investigation, click here