| Full name: long intergenic non-protein coding RNA 598 | Alias Symbol: TTL|lncFOXO1 | ||
| Type: non-coding RNA | Cytoband: 13q14.11 | ||
| Entrez ID: 646982 | HGNC ID: HGNC:42770 | Ensembl Gene: ENSG00000215483 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00598:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00598 | 646982 | 233432_at | -0.0131 | 0.9798 | |
| GSE26886 | LINC00598 | 646982 | 233432_at | 0.2286 | 0.0490 | |
| GSE45670 | LINC00598 | 646982 | 1555264_a_at | 0.1625 | 0.0594 | |
| GSE53622 | LINC00598 | 646982 | 82020 | -0.0582 | 0.7091 | |
| GSE53624 | LINC00598 | 646982 | 82020 | 0.1027 | 0.4142 | |
| GSE63941 | LINC00598 | 646982 | 233432_at | 0.3198 | 0.0471 | |
| GSE77861 | LINC00598 | 646982 | 233432_at | -0.0510 | 0.7311 | |
| SRP133303 | LINC00598 | 646982 | RNAseq | 0.0995 | 0.5944 | |
| SRP193095 | LINC00598 | 646982 | RNAseq | 0.1857 | 0.2681 | |
| SRP219564 | LINC00598 | 646982 | RNAseq | 0.1726 | 0.7453 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00598 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00598:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00598 | 646982 | 0 | 15 | 15 | |
| GSE20123 | LINC00598 | 646982 | 0 | 14 | 16 | |
| GSE43470 | LINC00598 | 646982 | 3 | 13 | 27 | |
| GSE46452 | LINC00598 | 646982 | 0 | 33 | 26 | |
| GSE47630 | LINC00598 | 646982 | 2 | 27 | 11 | |
| GSE54993 | LINC00598 | 646982 | 12 | 2 | 56 | |
| GSE54994 | LINC00598 | 646982 | 1 | 17 | 35 | |
| GSE60625 | LINC00598 | 646982 | 0 | 3 | 8 | |
| GSE74703 | LINC00598 | 646982 | 3 | 10 | 23 | |
| GSE74704 | LINC00598 | 646982 | 0 | 11 | 9 | |
| TCGA | LINC00598 | 646982 | 7 | 40 | 49 |
Total number of gains: 28; Total number of losses: 185; Total Number of normals: 275.
Somatic mutations of LINC00598:
Generating mutation plots.
Highly correlated genes for LINC00598:
Showing top 20/173 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00598 | PICK1 | 0.770982 | 3 | 0 | 3 |
| LINC00598 | SHANK2-AS3 | 0.743986 | 3 | 0 | 3 |
| LINC00598 | MORN1 | 0.740907 | 3 | 0 | 3 |
| LINC00598 | ADCY8 | 0.739569 | 3 | 0 | 3 |
| LINC00598 | KCNC4 | 0.731393 | 3 | 0 | 3 |
| LINC00598 | CYP11B2 | 0.729671 | 3 | 0 | 3 |
| LINC00598 | SCUBE1 | 0.726215 | 3 | 0 | 3 |
| LINC00598 | FABP2 | 0.719964 | 3 | 0 | 3 |
| LINC00598 | NR4A1 | 0.712166 | 3 | 0 | 3 |
| LINC00598 | CSF3 | 0.710481 | 4 | 0 | 4 |
| LINC00598 | NPEPL1 | 0.704856 | 3 | 0 | 3 |
| LINC00598 | GDAP1L1 | 0.702258 | 3 | 0 | 3 |
| LINC00598 | CDH23 | 0.701118 | 3 | 0 | 3 |
| LINC00598 | CHST8 | 0.700682 | 3 | 0 | 3 |
| LINC00598 | ASIC4 | 0.699528 | 4 | 0 | 4 |
| LINC00598 | ARC | 0.695145 | 3 | 0 | 3 |
| LINC00598 | TM4SF20 | 0.694519 | 3 | 0 | 3 |
| LINC00598 | NPR1 | 0.690571 | 4 | 0 | 4 |
| LINC00598 | TRIM54 | 0.689649 | 3 | 0 | 3 |
| LINC00598 | PRX | 0.683963 | 3 | 0 | 3 |
For details and further investigation, click here
