| Full name: long intergenic non-protein coding RNA 475 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 9q22.31 | ||
| Entrez ID: 158314 | HGNC ID: HGNC:23569 | Ensembl Gene: ENSG00000225511 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00475:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00475 | 158314 | 233525_s_at | 0.0471 | 0.8800 | |
| GSE26886 | LINC00475 | 158314 | 233525_s_at | 0.4929 | 0.0060 | |
| GSE45670 | LINC00475 | 158314 | 235776_x_at | 0.0432 | 0.6493 | |
| GSE53622 | LINC00475 | 158314 | 100645 | -0.7456 | 0.0000 | |
| GSE53624 | LINC00475 | 158314 | 24352 | 0.7096 | 0.0000 | |
| GSE63941 | LINC00475 | 158314 | 235776_x_at | -2.2155 | 0.0001 | |
| GSE77861 | LINC00475 | 158314 | 233525_s_at | -0.0772 | 0.8021 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by LINC00475 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00475:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00475 | 158314 | 6 | 9 | 15 | |
| GSE20123 | LINC00475 | 158314 | 6 | 9 | 15 | |
| GSE43470 | LINC00475 | 158314 | 6 | 4 | 33 | |
| GSE46452 | LINC00475 | 158314 | 6 | 14 | 39 | |
| GSE47630 | LINC00475 | 158314 | 1 | 17 | 22 | |
| GSE54993 | LINC00475 | 158314 | 4 | 2 | 64 | |
| GSE54994 | LINC00475 | 158314 | 8 | 11 | 34 | |
| GSE60625 | LINC00475 | 158314 | 0 | 0 | 11 | |
| GSE74703 | LINC00475 | 158314 | 5 | 3 | 28 | |
| GSE74704 | LINC00475 | 158314 | 3 | 7 | 10 | |
| TCGA | LINC00475 | 158314 | 22 | 24 | 50 |
Total number of gains: 67; Total number of losses: 100; Total Number of normals: 321.
Somatic mutations of LINC00475:
Generating mutation plots.
Highly correlated genes for LINC00475:
Showing top 20/116 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00475 | EXTL1 | 0.756842 | 4 | 0 | 4 |
| LINC00475 | GRIN1 | 0.74616 | 3 | 0 | 3 |
| LINC00475 | SLC32A1 | 0.742345 | 3 | 0 | 3 |
| LINC00475 | EVA1B | 0.733335 | 3 | 0 | 3 |
| LINC00475 | SHANK2-AS3 | 0.715236 | 3 | 0 | 3 |
| LINC00475 | KRTAP1-1 | 0.715039 | 3 | 0 | 3 |
| LINC00475 | DCDC2B | 0.713682 | 3 | 0 | 3 |
| LINC00475 | SLC6A2 | 0.713303 | 3 | 0 | 3 |
| LINC00475 | LIF | 0.711579 | 3 | 0 | 3 |
| LINC00475 | RHAG | 0.70729 | 3 | 0 | 3 |
| LINC00475 | RBAKDN | 0.69507 | 4 | 0 | 4 |
| LINC00475 | LRRC46 | 0.694735 | 3 | 0 | 3 |
| LINC00475 | CSF3 | 0.693801 | 3 | 0 | 3 |
| LINC00475 | CDH23 | 0.686507 | 4 | 0 | 3 |
| LINC00475 | CPAMD8 | 0.685843 | 3 | 0 | 3 |
| LINC00475 | CYP11B2 | 0.685408 | 4 | 0 | 4 |
| LINC00475 | PICK1 | 0.676252 | 4 | 0 | 3 |
| LINC00475 | RIMS4 | 0.671884 | 4 | 0 | 4 |
| LINC00475 | ADCY8 | 0.669495 | 3 | 0 | 3 |
| LINC00475 | PLEKHA4 | 0.667214 | 3 | 0 | 3 |
For details and further investigation, click here
