| Full name: synaptogyrin 3 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 16p13.3 | ||
| Entrez ID: 9143 | HGNC ID: HGNC:11501 | Ensembl Gene: ENSG00000127561 | OMIM ID: 603927 |
| Drug and gene relationship at DGIdb | |||
Expression of SYNGR3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SYNGR3 | 9143 | 205691_at | 1.1395 | 0.4762 | |
| GSE20347 | SYNGR3 | 9143 | 205691_at | 0.2351 | 0.0371 | |
| GSE23400 | SYNGR3 | 9143 | 205691_at | -0.0046 | 0.9031 | |
| GSE26886 | SYNGR3 | 9143 | 205691_at | 1.1119 | 0.0494 | |
| GSE29001 | SYNGR3 | 9143 | 205691_at | 0.5441 | 0.1012 | |
| GSE38129 | SYNGR3 | 9143 | 205691_at | 0.1864 | 0.1684 | |
| GSE45670 | SYNGR3 | 9143 | 205691_at | 0.8733 | 0.0123 | |
| GSE53622 | SYNGR3 | 9143 | 71361 | 0.6814 | 0.0000 | |
| GSE53624 | SYNGR3 | 9143 | 71361 | 0.7809 | 0.0000 | |
| GSE63941 | SYNGR3 | 9143 | 205691_at | 0.6009 | 0.4653 | |
| GSE77861 | SYNGR3 | 9143 | 205691_at | 0.2418 | 0.3708 | |
| GSE97050 | SYNGR3 | 9143 | A_23_P88909 | 0.1012 | 0.7043 | |
| SRP133303 | SYNGR3 | 9143 | RNAseq | 1.8450 | 0.0001 | |
| SRP159526 | SYNGR3 | 9143 | RNAseq | 0.3993 | 0.5373 | |
| TCGA | SYNGR3 | 9143 | RNAseq | -0.0102 | 0.9668 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by SYNGR3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SYNGR3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SYNGR3 | 9143 | 5 | 5 | 20 | |
| GSE20123 | SYNGR3 | 9143 | 5 | 4 | 21 | |
| GSE43470 | SYNGR3 | 9143 | 4 | 7 | 32 | |
| GSE46452 | SYNGR3 | 9143 | 38 | 1 | 20 | |
| GSE47630 | SYNGR3 | 9143 | 13 | 6 | 21 | |
| GSE54993 | SYNGR3 | 9143 | 3 | 5 | 62 | |
| GSE54994 | SYNGR3 | 9143 | 5 | 9 | 39 | |
| GSE60625 | SYNGR3 | 9143 | 4 | 0 | 7 | |
| GSE74703 | SYNGR3 | 9143 | 4 | 5 | 27 | |
| GSE74704 | SYNGR3 | 9143 | 3 | 2 | 15 | |
| TCGA | SYNGR3 | 9143 | 19 | 14 | 63 |
Total number of gains: 103; Total number of losses: 58; Total Number of normals: 327.
Somatic mutations of SYNGR3:
Generating mutation plots.
Highly correlated genes for SYNGR3:
Showing top 20/477 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SYNGR3 | ZC3HC1 | 0.798826 | 3 | 0 | 3 |
| SYNGR3 | ANAPC5 | 0.767812 | 3 | 0 | 3 |
| SYNGR3 | RBM4B | 0.76553 | 3 | 0 | 3 |
| SYNGR3 | CHAF1B | 0.762315 | 3 | 0 | 3 |
| SYNGR3 | REPIN1 | 0.762075 | 3 | 0 | 3 |
| SYNGR3 | THADA | 0.759921 | 3 | 0 | 3 |
| SYNGR3 | C6orf136 | 0.756949 | 3 | 0 | 3 |
| SYNGR3 | SPNS1 | 0.746008 | 3 | 0 | 3 |
| SYNGR3 | SRSF10 | 0.745392 | 3 | 0 | 3 |
| SYNGR3 | MED26 | 0.740489 | 3 | 0 | 3 |
| SYNGR3 | ESCO1 | 0.738835 | 3 | 0 | 3 |
| SYNGR3 | UBIAD1 | 0.738634 | 3 | 0 | 3 |
| SYNGR3 | DEK | 0.738045 | 3 | 0 | 3 |
| SYNGR3 | LSP1 | 0.735039 | 4 | 0 | 3 |
| SYNGR3 | JTB | 0.733067 | 3 | 0 | 3 |
| SYNGR3 | TRIM47 | 0.732897 | 3 | 0 | 3 |
| SYNGR3 | TFCP2 | 0.724477 | 3 | 0 | 3 |
| SYNGR3 | FAM122B | 0.720881 | 3 | 0 | 3 |
| SYNGR3 | LRRCC1 | 0.717256 | 3 | 0 | 3 |
| SYNGR3 | MCAM | 0.709109 | 3 | 0 | 3 |
For details and further investigation, click here
