| Full name: tripartite motif containing 47 | Alias Symbol: GOA|RNF100 | ||
| Type: protein-coding gene | Cytoband: 17q25.1 | ||
| Entrez ID: 91107 | HGNC ID: HGNC:19020 | Ensembl Gene: ENSG00000132481 | OMIM ID: 611041 |
| Drug and gene relationship at DGIdb | |||
Expression of TRIM47:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TRIM47 | 91107 | 225868_at | 0.6782 | 0.1946 | |
| GSE26886 | TRIM47 | 91107 | 225868_at | 1.1631 | 0.0001 | |
| GSE45670 | TRIM47 | 91107 | 225868_at | 0.1628 | 0.5287 | |
| GSE63941 | TRIM47 | 91107 | 225868_at | 1.0935 | 0.1632 | |
| GSE77861 | TRIM47 | 91107 | 225868_at | 0.5225 | 0.3191 | |
| GSE97050 | TRIM47 | 91107 | A_33_P3235053 | 0.1871 | 0.5673 | |
| SRP007169 | TRIM47 | 91107 | RNAseq | 0.5941 | 0.2702 | |
| SRP008496 | TRIM47 | 91107 | RNAseq | 0.2262 | 0.5439 | |
| SRP064894 | TRIM47 | 91107 | RNAseq | 0.7178 | 0.0055 | |
| SRP133303 | TRIM47 | 91107 | RNAseq | 0.6170 | 0.0002 | |
| SRP159526 | TRIM47 | 91107 | RNAseq | 0.5580 | 0.2126 | |
| SRP193095 | TRIM47 | 91107 | RNAseq | 1.0046 | 0.0000 | |
| SRP219564 | TRIM47 | 91107 | RNAseq | -0.0151 | 0.9718 | |
| TCGA | TRIM47 | 91107 | RNAseq | 0.1564 | 0.0478 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by TRIM47 expression:
 |
| TCGA |
Note: Click image to view full size file.
Copy number change of TRIM47:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TRIM47 | 91107 | 7 | 2 | 21 | |
| GSE20123 | TRIM47 | 91107 | 7 | 2 | 21 | |
| GSE43470 | TRIM47 | 91107 | 5 | 3 | 35 | |
| GSE46452 | TRIM47 | 91107 | 34 | 0 | 25 | |
| GSE47630 | TRIM47 | 91107 | 8 | 1 | 31 | |
| GSE54993 | TRIM47 | 91107 | 2 | 5 | 63 | |
| GSE54994 | TRIM47 | 91107 | 10 | 4 | 39 | |
| GSE60625 | TRIM47 | 91107 | 6 | 0 | 5 | |
| GSE74703 | TRIM47 | 91107 | 5 | 1 | 30 | |
| GSE74704 | TRIM47 | 91107 | 5 | 1 | 14 | |
| TCGA | TRIM47 | 91107 | 31 | 10 | 55 |
Total number of gains: 120; Total number of losses: 29; Total Number of normals: 339.
Somatic mutations of TRIM47:
Generating mutation plots.
Highly correlated genes for TRIM47:
Showing top 20/820 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TRIM47 | SNAPC4 | 0.865215 | 3 | 0 | 3 |
| TRIM47 | PTP4A3 | 0.850746 | 3 | 0 | 3 |
| TRIM47 | SORBS3 | 0.839932 | 3 | 0 | 3 |
| TRIM47 | KLF7 | 0.824882 | 3 | 0 | 3 |
| TRIM47 | ZNF579 | 0.817796 | 3 | 0 | 3 |
| TRIM47 | ZNF683 | 0.81599 | 3 | 0 | 3 |
| TRIM47 | TCF7L1 | 0.814017 | 3 | 0 | 3 |
| TRIM47 | KCNAB2 | 0.811543 | 3 | 0 | 3 |
| TRIM47 | GRIN3B | 0.805996 | 3 | 0 | 3 |
| TRIM47 | IDS | 0.805206 | 3 | 0 | 3 |
| TRIM47 | LIMD2 | 0.79436 | 3 | 0 | 3 |
| TRIM47 | C12orf65 | 0.792743 | 3 | 0 | 3 |
| TRIM47 | GLIS2 | 0.788772 | 3 | 0 | 3 |
| TRIM47 | BCAS4 | 0.782305 | 3 | 0 | 3 |
| TRIM47 | NENF | 0.779141 | 4 | 0 | 4 |
| TRIM47 | BEST1 | 0.774684 | 3 | 0 | 3 |
| TRIM47 | SF3B2 | 0.773374 | 3 | 0 | 3 |
| TRIM47 | ZNF787 | 0.772829 | 3 | 0 | 3 |
| TRIM47 | RHOBTB2 | 0.7726 | 3 | 0 | 3 |
| TRIM47 | TRMT5 | 0.771011 | 3 | 0 | 3 |
For details and further investigation, click here
