| Full name: TNRC6C antisense RNA 1 | Alias Symbol: lnc|TMC6 | ||
| Type: non-coding RNA | Cytoband: 17q25.3 | ||
| Entrez ID: 100131096 | HGNC ID: HGNC:44360 | Ensembl Gene: ENSG00000204282 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of TNRC6C-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TNRC6C-AS1 | 100131096 | 242364_x_at | 0.3349 | 0.3911 | |
| GSE26886 | TNRC6C-AS1 | 100131096 | 242364_x_at | 0.1672 | 0.3668 | |
| GSE45670 | TNRC6C-AS1 | 100131096 | 242364_x_at | 0.4534 | 0.0012 | |
| GSE63941 | TNRC6C-AS1 | 100131096 | 242364_x_at | 0.2001 | 0.4707 | |
| GSE77861 | TNRC6C-AS1 | 100131096 | 242364_x_at | 0.2401 | 0.3064 | |
| SRP007169 | TNRC6C-AS1 | 100131096 | RNAseq | 1.4697 | 0.0214 | |
| SRP064894 | TNRC6C-AS1 | 100131096 | RNAseq | 1.0738 | 0.0001 | |
| SRP133303 | TNRC6C-AS1 | 100131096 | RNAseq | 0.0365 | 0.8062 | |
| SRP159526 | TNRC6C-AS1 | 100131096 | RNAseq | 0.0174 | 0.9640 | |
| SRP193095 | TNRC6C-AS1 | 100131096 | RNAseq | 0.3641 | 0.0336 | |
| SRP219564 | TNRC6C-AS1 | 100131096 | RNAseq | 0.5010 | 0.2024 |
Upregulated datasets: 2; Downregulated datasets: 0.
Copy number change of TNRC6C-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TNRC6C-AS1 | 100131096 | 5 | 4 | 21 | |
| GSE20123 | TNRC6C-AS1 | 100131096 | 5 | 4 | 21 | |
| GSE43470 | TNRC6C-AS1 | 100131096 | 3 | 4 | 36 | |
| GSE46452 | TNRC6C-AS1 | 100131096 | 33 | 0 | 26 | |
| GSE47630 | TNRC6C-AS1 | 100131096 | 8 | 1 | 31 | |
| GSE54993 | TNRC6C-AS1 | 100131096 | 2 | 5 | 63 | |
| GSE54994 | TNRC6C-AS1 | 100131096 | 10 | 4 | 39 | |
| GSE60625 | TNRC6C-AS1 | 100131096 | 6 | 0 | 5 | |
| GSE74703 | TNRC6C-AS1 | 100131096 | 3 | 2 | 31 | |
| GSE74704 | TNRC6C-AS1 | 100131096 | 4 | 3 | 13 |
Total number of gains: 79; Total number of losses: 27; Total Number of normals: 286.
Somatic mutations of TNRC6C-AS1:
Generating mutation plots.
Highly correlated genes for TNRC6C-AS1:
Showing top 20/97 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TNRC6C-AS1 | PRR11 | 0.830074 | 4 | 0 | 4 |
| TNRC6C-AS1 | DDX59 | 0.828317 | 4 | 0 | 4 |
| TNRC6C-AS1 | SLC35E1 | 0.826165 | 5 | 0 | 5 |
| TNRC6C-AS1 | MZT2B | 0.82514 | 4 | 0 | 4 |
| TNRC6C-AS1 | CCDC152 | 0.79489 | 5 | 0 | 5 |
| TNRC6C-AS1 | NLN | 0.791179 | 5 | 0 | 5 |
| TNRC6C-AS1 | GTF2H3 | 0.782941 | 4 | 0 | 4 |
| TNRC6C-AS1 | FBXW12 | 0.77801 | 5 | 0 | 5 |
| TNRC6C-AS1 | HAUS2 | 0.773876 | 4 | 0 | 4 |
| TNRC6C-AS1 | ZC3H7B | 0.771918 | 3 | 0 | 3 |
| TNRC6C-AS1 | CDK13 | 0.771482 | 5 | 0 | 5 |
| TNRC6C-AS1 | ZNF721 | 0.765704 | 5 | 0 | 5 |
| TNRC6C-AS1 | C9orf64 | 0.765674 | 5 | 0 | 4 |
| TNRC6C-AS1 | DLGAP4 | 0.763649 | 5 | 0 | 5 |
| TNRC6C-AS1 | ALMS1 | 0.763484 | 3 | 0 | 3 |
| TNRC6C-AS1 | ORAI2 | 0.759735 | 4 | 0 | 4 |
| TNRC6C-AS1 | PGF | 0.75837 | 5 | 0 | 5 |
| TNRC6C-AS1 | ADH4 | 0.754768 | 3 | 0 | 3 |
| TNRC6C-AS1 | ZNF160 | 0.752666 | 5 | 0 | 4 |
| TNRC6C-AS1 | TCIRG1 | 0.748078 | 3 | 0 | 3 |
For details and further investigation, click here
