| Full name: ArfGAP with FG repeats 1 | Alias Symbol: RIP|RAB | ||
| Type: protein-coding gene | Cytoband: 2q36.3 | ||
| Entrez ID: 3267 | HGNC ID: HGNC:5175 | Ensembl Gene: ENSG00000173744 | OMIM ID: 600862 |
| Drug and gene relationship at DGIdb | |||
Expression of AGFG1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | AGFG1 | 3267 | 218091_at | 0.0365 | 0.9437 | |
| GSE20347 | AGFG1 | 3267 | 218091_at | -0.0054 | 0.9748 | |
| GSE23400 | AGFG1 | 3267 | 218091_at | 0.0403 | 0.4795 | |
| GSE26886 | AGFG1 | 3267 | 218092_s_at | -0.4365 | 0.0863 | |
| GSE29001 | AGFG1 | 3267 | 218091_at | 0.0230 | 0.9148 | |
| GSE38129 | AGFG1 | 3267 | 218091_at | 0.0482 | 0.7022 | |
| GSE45670 | AGFG1 | 3267 | 218092_s_at | 0.6778 | 0.0002 | |
| GSE53622 | AGFG1 | 3267 | 15296 | 0.3128 | 0.0000 | |
| GSE53624 | AGFG1 | 3267 | 15296 | 0.0221 | 0.7681 | |
| GSE63941 | AGFG1 | 3267 | 218092_s_at | -0.0745 | 0.8969 | |
| GSE77861 | AGFG1 | 3267 | 218092_s_at | 0.0100 | 0.9873 | |
| GSE97050 | AGFG1 | 3267 | A_33_P3238993 | 0.7292 | 0.1646 | |
| SRP007169 | AGFG1 | 3267 | RNAseq | 0.1089 | 0.8121 | |
| SRP008496 | AGFG1 | 3267 | RNAseq | 0.2674 | 0.3454 | |
| SRP064894 | AGFG1 | 3267 | RNAseq | 0.0474 | 0.7877 | |
| SRP133303 | AGFG1 | 3267 | RNAseq | 0.6820 | 0.0010 | |
| SRP159526 | AGFG1 | 3267 | RNAseq | -0.0413 | 0.8587 | |
| SRP193095 | AGFG1 | 3267 | RNAseq | 0.1708 | 0.2166 | |
| SRP219564 | AGFG1 | 3267 | RNAseq | -0.3521 | 0.2209 | |
| TCGA | AGFG1 | 3267 | RNAseq | 0.0780 | 0.0985 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by AGFG1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of AGFG1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | AGFG1 | 3267 | 2 | 12 | 16 | |
| GSE20123 | AGFG1 | 3267 | 2 | 12 | 16 | |
| GSE43470 | AGFG1 | 3267 | 0 | 7 | 36 | |
| GSE46452 | AGFG1 | 3267 | 0 | 5 | 54 | |
| GSE47630 | AGFG1 | 3267 | 4 | 5 | 31 | |
| GSE54993 | AGFG1 | 3267 | 1 | 2 | 67 | |
| GSE54994 | AGFG1 | 3267 | 6 | 11 | 36 | |
| GSE60625 | AGFG1 | 3267 | 0 | 3 | 8 | |
| GSE74703 | AGFG1 | 3267 | 0 | 6 | 30 | |
| GSE74704 | AGFG1 | 3267 | 2 | 6 | 12 | |
| TCGA | AGFG1 | 3267 | 13 | 26 | 57 |
Total number of gains: 30; Total number of losses: 95; Total Number of normals: 363.
Somatic mutations of AGFG1:
Generating mutation plots.
Highly correlated genes for AGFG1:
Showing top 20/216 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| AGFG1 | STAMBP | 0.787052 | 3 | 0 | 3 |
| AGFG1 | SP110 | 0.777987 | 3 | 0 | 3 |
| AGFG1 | PPP4R2 | 0.725662 | 3 | 0 | 3 |
| AGFG1 | ESR2 | 0.723623 | 3 | 0 | 3 |
| AGFG1 | TMEM19 | 0.720738 | 3 | 0 | 3 |
| AGFG1 | MTIF2 | 0.716928 | 3 | 0 | 3 |
| AGFG1 | SUPT4H1 | 0.69974 | 3 | 0 | 3 |
| AGFG1 | POLR2C | 0.696486 | 3 | 0 | 3 |
| AGFG1 | CD2BP2 | 0.695708 | 3 | 0 | 3 |
| AGFG1 | TRUB1 | 0.694462 | 3 | 0 | 3 |
| AGFG1 | KCMF1 | 0.694161 | 3 | 0 | 3 |
| AGFG1 | HERPUD2 | 0.694066 | 3 | 0 | 3 |
| AGFG1 | CCDC85C | 0.692015 | 3 | 0 | 3 |
| AGFG1 | MEF2A | 0.69148 | 3 | 0 | 3 |
| AGFG1 | ACSS2 | 0.689563 | 3 | 0 | 3 |
| AGFG1 | TUFM | 0.688658 | 3 | 0 | 3 |
| AGFG1 | ARPC2 | 0.682553 | 3 | 0 | 3 |
| AGFG1 | CYLD | 0.679731 | 4 | 0 | 3 |
| AGFG1 | ZNF668 | 0.675283 | 3 | 0 | 3 |
| AGFG1 | SEC61G | 0.673286 | 4 | 0 | 3 |
For details and further investigation, click here
