| Full name: collagen type XIII alpha 1 chain | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 10q22.1 | ||
| Entrez ID: 1305 | HGNC ID: HGNC:2190 | Ensembl Gene: ENSG00000197467 | OMIM ID: 120350 |
| Drug and gene relationship at DGIdb | |||
Expression of COL13A1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | COL13A1 | 1305 | 211343_s_at | 1.0957 | 0.1511 | |
| GSE20347 | COL13A1 | 1305 | 208535_x_at | -0.0014 | 0.9891 | |
| GSE23400 | COL13A1 | 1305 | 208535_x_at | -0.1018 | 0.0029 | |
| GSE26886 | COL13A1 | 1305 | 208535_x_at | 0.1428 | 0.1813 | |
| GSE29001 | COL13A1 | 1305 | 211343_s_at | 0.7192 | 0.0386 | |
| GSE38129 | COL13A1 | 1305 | 208535_x_at | -0.0773 | 0.4460 | |
| GSE45670 | COL13A1 | 1305 | 211343_s_at | 0.6901 | 0.1077 | |
| GSE53622 | COL13A1 | 1305 | 34976 | 0.4756 | 0.0042 | |
| GSE53624 | COL13A1 | 1305 | 34976 | 1.1927 | 0.0000 | |
| GSE63941 | COL13A1 | 1305 | 208535_x_at | 0.1879 | 0.2500 | |
| GSE77861 | COL13A1 | 1305 | 211809_x_at | -0.0029 | 0.9882 | |
| GSE97050 | COL13A1 | 1305 | A_23_P1331 | 0.1593 | 0.5924 | |
| SRP064894 | COL13A1 | 1305 | RNAseq | 1.2356 | 0.0000 | |
| SRP133303 | COL13A1 | 1305 | RNAseq | 0.9114 | 0.0021 | |
| SRP159526 | COL13A1 | 1305 | RNAseq | 1.2299 | 0.0026 | |
| SRP193095 | COL13A1 | 1305 | RNAseq | 1.8016 | 0.0000 | |
| SRP219564 | COL13A1 | 1305 | RNAseq | 1.4336 | 0.0060 | |
| TCGA | COL13A1 | 1305 | RNAseq | 0.4140 | 0.0501 |
Upregulated datasets: 5; Downregulated datasets: 0.
Survival by COL13A1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of COL13A1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | COL13A1 | 1305 | 2 | 4 | 24 | |
| GSE20123 | COL13A1 | 1305 | 2 | 3 | 25 | |
| GSE43470 | COL13A1 | 1305 | 1 | 7 | 35 | |
| GSE46452 | COL13A1 | 1305 | 0 | 11 | 48 | |
| GSE47630 | COL13A1 | 1305 | 2 | 14 | 24 | |
| GSE54993 | COL13A1 | 1305 | 7 | 0 | 63 | |
| GSE54994 | COL13A1 | 1305 | 2 | 12 | 39 | |
| GSE60625 | COL13A1 | 1305 | 0 | 0 | 11 | |
| GSE74703 | COL13A1 | 1305 | 1 | 4 | 31 | |
| GSE74704 | COL13A1 | 1305 | 1 | 1 | 18 | |
| TCGA | COL13A1 | 1305 | 9 | 23 | 64 |
Total number of gains: 27; Total number of losses: 79; Total Number of normals: 382.
Somatic mutations of COL13A1:
Generating mutation plots.
Highly correlated genes for COL13A1:
Showing top 20/660 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| COL13A1 | LIN37 | 0.737095 | 3 | 0 | 3 |
| COL13A1 | ABL2 | 0.695315 | 5 | 0 | 5 |
| COL13A1 | KIR2DS3 | 0.693473 | 3 | 0 | 3 |
| COL13A1 | ALPK2 | 0.685636 | 3 | 0 | 3 |
| COL13A1 | DZIP1 | 0.674185 | 5 | 0 | 5 |
| COL13A1 | ATP2B1 | 0.672871 | 3 | 0 | 3 |
| COL13A1 | SLC41A1 | 0.669129 | 5 | 0 | 5 |
| COL13A1 | NEK6 | 0.666745 | 4 | 0 | 3 |
| COL13A1 | PPP1R18 | 0.665949 | 5 | 0 | 5 |
| COL13A1 | TLR2 | 0.659998 | 6 | 0 | 6 |
| COL13A1 | BBS12 | 0.658211 | 3 | 0 | 3 |
| COL13A1 | MICALL2 | 0.657358 | 3 | 0 | 3 |
| COL13A1 | CHST8 | 0.655904 | 4 | 0 | 4 |
| COL13A1 | JKAMP | 0.652731 | 4 | 0 | 3 |
| COL13A1 | SLC41A2 | 0.651181 | 5 | 0 | 4 |
| COL13A1 | SLC22A4 | 0.648567 | 6 | 0 | 5 |
| COL13A1 | CSTF3 | 0.645706 | 3 | 0 | 3 |
| COL13A1 | ABCE1 | 0.64553 | 4 | 0 | 4 |
| COL13A1 | ADAMTS14 | 0.645298 | 4 | 0 | 4 |
| COL13A1 | NFAM1 | 0.642883 | 3 | 0 | 3 |
For details and further investigation, click here
