| Full name: long intergenic non-protein coding RNA 28 | Alias Symbol: dJ1093G12.6 | ||
| Type: non-coding RNA | Cytoband: 20q11.21 | ||
| Entrez ID: 140875 | HGNC ID: HGNC:16224 | Ensembl Gene: ENSG00000233354 | OMIM ID: |
Expression of LINC00028:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00028 | 140875 | 233812_at | -0.0615 | 0.8203 | |
| GSE26886 | LINC00028 | 140875 | 233812_at | 0.1884 | 0.1390 | |
| GSE45670 | LINC00028 | 140875 | 233812_at | 0.0073 | 0.9524 | |
| GSE53622 | LINC00028 | 140875 | 45591 | -1.0862 | 0.0000 | |
| GSE53624 | LINC00028 | 140875 | 19286 | -1.6468 | 0.0000 | |
| GSE63941 | LINC00028 | 140875 | 233812_at | 0.2154 | 0.0899 | |
| GSE77861 | LINC00028 | 140875 | 233812_at | -0.1585 | 0.2912 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by LINC00028 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00028:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00028 | 140875 | 14 | 0 | 16 | |
| GSE20123 | LINC00028 | 140875 | 14 | 0 | 16 | |
| GSE43470 | LINC00028 | 140875 | 11 | 0 | 32 | |
| GSE46452 | LINC00028 | 140875 | 29 | 0 | 30 | |
| GSE47630 | LINC00028 | 140875 | 24 | 0 | 16 | |
| GSE54993 | LINC00028 | 140875 | 0 | 17 | 53 | |
| GSE54994 | LINC00028 | 140875 | 27 | 1 | 25 | |
| GSE60625 | LINC00028 | 140875 | 0 | 0 | 11 | |
| GSE74703 | LINC00028 | 140875 | 10 | 0 | 26 | |
| GSE74704 | LINC00028 | 140875 | 9 | 0 | 11 | |
| TCGA | LINC00028 | 140875 | 49 | 1 | 46 |
Total number of gains: 187; Total number of losses: 19; Total Number of normals: 282.
Somatic mutations of LINC00028:
Generating mutation plots.
Highly correlated genes for LINC00028:
Showing top 20/117 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00028 | DCDC2B | 0.709218 | 3 | 0 | 3 |
| LINC00028 | LRRC46 | 0.708892 | 5 | 0 | 4 |
| LINC00028 | ZDHHC1 | 0.687766 | 3 | 0 | 3 |
| LINC00028 | GRM7 | 0.67894 | 3 | 0 | 3 |
| LINC00028 | EVX1 | 0.671958 | 3 | 0 | 3 |
| LINC00028 | DUSP15 | 0.668806 | 3 | 0 | 3 |
| LINC00028 | SEZ6L2 | 0.653204 | 3 | 0 | 3 |
| LINC00028 | LINC01305 | 0.650542 | 3 | 0 | 3 |
| LINC00028 | JSRP1 | 0.64991 | 3 | 0 | 3 |
| LINC00028 | CCL1 | 0.64478 | 3 | 0 | 3 |
| LINC00028 | CTSE | 0.644533 | 3 | 0 | 3 |
| LINC00028 | IGH | 0.641338 | 3 | 0 | 3 |
| LINC00028 | SHANK1 | 0.639615 | 3 | 0 | 3 |
| LINC00028 | ADAMTS7 | 0.63058 | 5 | 0 | 3 |
| LINC00028 | SLC22A6 | 0.626427 | 3 | 0 | 3 |
| LINC00028 | CNGB1 | 0.62528 | 3 | 0 | 3 |
| LINC00028 | NPEPL1 | 0.623011 | 4 | 0 | 3 |
| LINC00028 | NEUROG1 | 0.621282 | 4 | 0 | 3 |
| LINC00028 | MYBPC3 | 0.616401 | 5 | 0 | 3 |
| LINC00028 | CPNE7 | 0.6153 | 4 | 0 | 3 |
For details and further investigation, click here
