| Full name: long intergenic non-protein coding RNA 408 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 13q12.11 | ||
| Entrez ID: 100652856 | HGNC ID: HGNC:42740 | Ensembl Gene: ENSG00000226250 | OMIM ID: |
Expression of LINC00408:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00408 | 100652856 | 1556206_at | -0.1330 | 0.5898 | |
| GSE26886 | LINC00408 | 100652856 | 1556206_at | 0.0600 | 0.6405 | |
| GSE45670 | LINC00408 | 100652856 | 1556206_at | 0.0974 | 0.4562 | |
| GSE53622 | LINC00408 | 100652856 | 165773 | 1.0479 | 0.0000 | |
| GSE53624 | LINC00408 | 100652856 | 165773 | 1.4201 | 0.0000 | |
| GSE63941 | LINC00408 | 100652856 | 1556206_at | 0.2392 | 0.3752 | |
| GSE77861 | LINC00408 | 100652856 | 1556206_at | 0.0595 | 0.6330 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by LINC00408 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00408:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00408 | 100652856 | 1 | 15 | 14 | |
| GSE20123 | LINC00408 | 100652856 | 1 | 14 | 15 | |
| GSE43470 | LINC00408 | 100652856 | 1 | 13 | 29 | |
| GSE46452 | LINC00408 | 100652856 | 0 | 33 | 26 | |
| GSE47630 | LINC00408 | 100652856 | 3 | 26 | 11 | |
| GSE54993 | LINC00408 | 100652856 | 11 | 2 | 57 | |
| GSE54994 | LINC00408 | 100652856 | 2 | 12 | 39 | |
| GSE60625 | LINC00408 | 100652856 | 0 | 3 | 8 | |
| GSE74703 | LINC00408 | 100652856 | 1 | 10 | 25 | |
| GSE74704 | LINC00408 | 100652856 | 0 | 12 | 8 |
Total number of gains: 20; Total number of losses: 140; Total Number of normals: 232.
Somatic mutations of LINC00408:
Generating mutation plots.
Highly correlated genes for LINC00408:
Showing top 20/45 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00408 | KCNJ9 | 0.691995 | 4 | 0 | 4 |
| LINC00408 | FAM186A | 0.676697 | 3 | 0 | 3 |
| LINC00408 | PCGEM1 | 0.659166 | 3 | 0 | 3 |
| LINC00408 | DEFA6 | 0.657384 | 3 | 0 | 3 |
| LINC00408 | CACNG5 | 0.644562 | 3 | 0 | 3 |
| LINC00408 | LGALS12 | 0.642211 | 3 | 0 | 3 |
| LINC00408 | OR3A1 | 0.640217 | 3 | 0 | 3 |
| LINC00408 | CDRT15 | 0.637532 | 3 | 0 | 3 |
| LINC00408 | CPLX2 | 0.627567 | 3 | 0 | 3 |
| LINC00408 | SRPK3 | 0.616426 | 4 | 0 | 3 |
| LINC00408 | LINC00851 | 0.614059 | 3 | 0 | 3 |
| LINC00408 | USP2-AS1 | 0.610715 | 5 | 0 | 3 |
| LINC00408 | LGI2 | 0.608034 | 3 | 0 | 3 |
| LINC00408 | TTLL6 | 0.598654 | 3 | 0 | 3 |
| LINC00408 | AATK | 0.597526 | 3 | 0 | 3 |
| LINC00408 | IL17F | 0.597255 | 3 | 0 | 3 |
| LINC00408 | LYZL6 | 0.590124 | 3 | 0 | 3 |
| LINC00408 | ITIH6 | 0.585357 | 5 | 0 | 3 |
| LINC00408 | LINC00293 | 0.579944 | 3 | 0 | 3 |
| LINC00408 | FSCN3 | 0.57902 | 4 | 0 | 3 |
For details and further investigation, click here
