| Full name: long intergenic non-protein coding RNA 588 | Alias Symbol: DKFZP434F122 | ||
| Type: non-coding RNA | Cytoband: 8q12.1 | ||
| Entrez ID: 26138 | HGNC ID: HGNC:24494 | Ensembl Gene: ENSG00000215117 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00588:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00588 | 26138 | 210464_at | -0.0625 | 0.7737 | |
| GSE20347 | LINC00588 | 26138 | 210464_at | -0.0210 | 0.6839 | |
| GSE23400 | LINC00588 | 26138 | 210464_at | -0.0423 | 0.0237 | |
| GSE26886 | LINC00588 | 26138 | 210464_at | 0.1043 | 0.1869 | |
| GSE29001 | LINC00588 | 26138 | 210464_at | -0.0173 | 0.8597 | |
| GSE38129 | LINC00588 | 26138 | 210464_at | -0.0293 | 0.5218 | |
| GSE45670 | LINC00588 | 26138 | 210464_at | 0.0207 | 0.8010 | |
| GSE53622 | LINC00588 | 26138 | 39884 | -0.2421 | 0.0905 | |
| GSE53624 | LINC00588 | 26138 | 39884 | 0.0153 | 0.9032 | |
| GSE63941 | LINC00588 | 26138 | 210464_at | -0.0342 | 0.8451 | |
| GSE77861 | LINC00588 | 26138 | 210464_at | -0.0510 | 0.5834 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00588 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00588:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00588 | 26138 | 14 | 1 | 15 | |
| GSE20123 | LINC00588 | 26138 | 14 | 1 | 15 | |
| GSE43470 | LINC00588 | 26138 | 13 | 3 | 27 | |
| GSE46452 | LINC00588 | 26138 | 20 | 3 | 36 | |
| GSE47630 | LINC00588 | 26138 | 23 | 1 | 16 | |
| GSE54993 | LINC00588 | 26138 | 1 | 17 | 52 | |
| GSE54994 | LINC00588 | 26138 | 30 | 0 | 23 | |
| GSE60625 | LINC00588 | 26138 | 0 | 4 | 7 | |
| GSE74703 | LINC00588 | 26138 | 12 | 2 | 22 | |
| GSE74704 | LINC00588 | 26138 | 10 | 0 | 10 | |
| TCGA | LINC00588 | 26138 | 44 | 7 | 45 |
Total number of gains: 181; Total number of losses: 39; Total Number of normals: 268.
Somatic mutations of LINC00588:
Generating mutation plots.
Highly correlated genes for LINC00588:
Showing top 20/34 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00588 | EPO | 0.637231 | 3 | 0 | 3 |
| LINC00588 | SYCE1 | 0.612829 | 3 | 0 | 3 |
| LINC00588 | WNT1 | 0.591396 | 3 | 0 | 3 |
| LINC00588 | MRGPRX4 | 0.589179 | 4 | 0 | 3 |
| LINC00588 | PRPH2 | 0.573483 | 3 | 0 | 3 |
| LINC00588 | TNFSF11 | 0.572504 | 4 | 0 | 4 |
| LINC00588 | KLRG1 | 0.567477 | 3 | 0 | 3 |
| LINC00588 | FRMPD4 | 0.56007 | 5 | 0 | 3 |
| LINC00588 | PNLIPRP1 | 0.553121 | 5 | 0 | 4 |
| LINC00588 | MROH7 | 0.553012 | 4 | 0 | 3 |
| LINC00588 | MYCN | 0.552528 | 3 | 0 | 3 |
| LINC00588 | SPX | 0.550036 | 5 | 0 | 3 |
| LINC00588 | NRAP | 0.548304 | 3 | 0 | 3 |
| LINC00588 | SCTR | 0.545521 | 4 | 0 | 3 |
| LINC00588 | F11 | 0.535916 | 3 | 0 | 3 |
| LINC00588 | DLX6 | 0.535124 | 5 | 0 | 3 |
| LINC00588 | DGKB | 0.533399 | 4 | 0 | 3 |
| LINC00588 | ARMC4 | 0.533398 | 6 | 0 | 4 |
| LINC00588 | NDP | 0.531932 | 4 | 0 | 3 |
| LINC00588 | TAL1 | 0.531339 | 6 | 0 | 3 |
For details and further investigation, click here
