| Full name: long intergenic non-protein coding RNA 628 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 1q32.1 | ||
| Entrez ID: 127841 | HGNC ID: HGNC:27008 | Ensembl Gene: ENSG00000280924 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00628:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00628 | 127841 | 1565556_at | -0.2601 | 0.2906 | |
| GSE26886 | LINC00628 | 127841 | 1565554_at | 0.0559 | 0.5652 | |
| GSE45670 | LINC00628 | 127841 | 1565554_at | -0.0362 | 0.7461 | |
| GSE63941 | LINC00628 | 127841 | 1565556_at | 0.0679 | 0.7347 | |
| GSE77861 | LINC00628 | 127841 | 1565554_at | -0.1597 | 0.1057 |
Upregulated datasets: 0; Downregulated datasets: 0.
Copy number change of LINC00628:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00628 | 127841 | 11 | 0 | 19 | |
| GSE20123 | LINC00628 | 127841 | 11 | 0 | 19 | |
| GSE43470 | LINC00628 | 127841 | 6 | 0 | 37 | |
| GSE46452 | LINC00628 | 127841 | 3 | 1 | 55 | |
| GSE47630 | LINC00628 | 127841 | 14 | 0 | 26 | |
| GSE54993 | LINC00628 | 127841 | 0 | 6 | 64 | |
| GSE54994 | LINC00628 | 127841 | 15 | 0 | 38 | |
| GSE60625 | LINC00628 | 127841 | 0 | 0 | 11 | |
| GSE74703 | LINC00628 | 127841 | 6 | 0 | 30 | |
| GSE74704 | LINC00628 | 127841 | 5 | 0 | 15 |
Total number of gains: 71; Total number of losses: 7; Total Number of normals: 314.
Somatic mutations of LINC00628:
Generating mutation plots.
Highly correlated genes for LINC00628:
Showing top 20/86 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00628 | ST18 | 0.718253 | 3 | 0 | 3 |
| LINC00628 | LINC00327 | 0.668593 | 3 | 0 | 3 |
| LINC00628 | ZMYND10 | 0.656901 | 4 | 0 | 4 |
| LINC00628 | TRABD2B | 0.646244 | 3 | 0 | 3 |
| LINC00628 | EPO | 0.643116 | 4 | 0 | 3 |
| LINC00628 | PNMT | 0.637822 | 3 | 0 | 3 |
| LINC00628 | NPR1 | 0.632959 | 3 | 0 | 3 |
| LINC00628 | HCN1 | 0.631016 | 4 | 0 | 3 |
| LINC00628 | MPL | 0.628028 | 4 | 0 | 3 |
| LINC00628 | FAM170A | 0.626984 | 3 | 0 | 3 |
| LINC00628 | TPSD1 | 0.624918 | 4 | 0 | 3 |
| LINC00628 | KIF9-AS1 | 0.623255 | 3 | 0 | 3 |
| LINC00628 | PURB | 0.620338 | 3 | 0 | 3 |
| LINC00628 | SIGLEC8 | 0.617269 | 3 | 0 | 3 |
| LINC00628 | TEKT2 | 0.614787 | 3 | 0 | 3 |
| LINC00628 | C11orf16 | 0.613103 | 3 | 0 | 3 |
| LINC00628 | C16orf86 | 0.61094 | 3 | 0 | 3 |
| LINC00628 | JPH2 | 0.610408 | 3 | 0 | 3 |
| LINC00628 | PARD3B | 0.6096 | 3 | 0 | 3 |
| LINC00628 | KCNQ2 | 0.608051 | 4 | 0 | 3 |
For details and further investigation, click here
