| Full name: long intergenic non-protein coding RNA 656 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 20p11.21 | ||
| Entrez ID: 200261 | HGNC ID: HGNC:27304 | Ensembl Gene: ENSG00000233746 | OMIM ID: |
Expression of LINC00656:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00656 | 200261 | 1554382_at | -0.0997 | 0.7404 | |
| GSE26886 | LINC00656 | 200261 | 1554382_at | -0.1330 | 0.3441 | |
| GSE45670 | LINC00656 | 200261 | 1554382_at | 0.1641 | 0.0414 | |
| GSE53622 | LINC00656 | 200261 | 104262 | 0.6250 | 0.0000 | |
| GSE53624 | LINC00656 | 200261 | 104262 | 0.3271 | 0.0354 | |
| GSE63941 | LINC00656 | 200261 | 1554382_at | -0.2192 | 0.1505 | |
| GSE77861 | LINC00656 | 200261 | 1554382_at | -0.1606 | 0.0809 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00656 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00656:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00656 | 200261 | 13 | 1 | 16 | |
| GSE20123 | LINC00656 | 200261 | 13 | 1 | 16 | |
| GSE43470 | LINC00656 | 200261 | 11 | 1 | 31 | |
| GSE46452 | LINC00656 | 200261 | 27 | 1 | 31 | |
| GSE47630 | LINC00656 | 200261 | 17 | 4 | 19 | |
| GSE54993 | LINC00656 | 200261 | 0 | 17 | 53 | |
| GSE54994 | LINC00656 | 200261 | 26 | 2 | 25 | |
| GSE60625 | LINC00656 | 200261 | 0 | 0 | 11 | |
| GSE74703 | LINC00656 | 200261 | 9 | 1 | 26 | |
| GSE74704 | LINC00656 | 200261 | 7 | 1 | 12 | |
| TCGA | LINC00656 | 200261 | 42 | 11 | 43 |
Total number of gains: 165; Total number of losses: 40; Total Number of normals: 283.
Somatic mutations of LINC00656:
Generating mutation plots.
Highly correlated genes for LINC00656:
Showing top 20/48 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00656 | FNDC9 | 0.726413 | 3 | 0 | 3 |
| LINC00656 | LIPE-AS1 | 0.690843 | 3 | 0 | 3 |
| LINC00656 | HOXB-AS3 | 0.665143 | 4 | 0 | 3 |
| LINC00656 | ASB16 | 0.659538 | 3 | 0 | 3 |
| LINC00656 | PPP1R1A | 0.646483 | 3 | 0 | 3 |
| LINC00656 | FOXP3 | 0.620146 | 4 | 0 | 4 |
| LINC00656 | TMEM26 | 0.616362 | 3 | 0 | 3 |
| LINC00656 | F2RL3 | 0.615954 | 4 | 0 | 3 |
| LINC00656 | STX1B | 0.610343 | 6 | 0 | 4 |
| LINC00656 | KCNF1 | 0.608939 | 3 | 0 | 3 |
| LINC00656 | SLC22A9 | 0.608904 | 5 | 0 | 4 |
| LINC00656 | APOB | 0.607437 | 4 | 0 | 3 |
| LINC00656 | SENCR | 0.605375 | 4 | 0 | 3 |
| LINC00656 | PAPPA2 | 0.602632 | 3 | 0 | 3 |
| LINC00656 | KLHL17 | 0.600612 | 4 | 0 | 3 |
| LINC00656 | LTK | 0.59952 | 4 | 0 | 4 |
| LINC00656 | D2HGDH | 0.597206 | 3 | 0 | 3 |
| LINC00656 | MT4 | 0.595226 | 3 | 0 | 3 |
| LINC00656 | HCP5B | 0.590566 | 3 | 0 | 3 |
| LINC00656 | MRGPRG-AS1 | 0.588843 | 3 | 0 | 3 |
For details and further investigation, click here
