| Full name: long intergenic non-protein coding RNA 658 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 20p12.3 | ||
| Entrez ID: 100507629 | HGNC ID: HGNC:44315 | Ensembl Gene: ENSG00000226995 | OMIM ID: |
Expression of LINC00658:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00658 | 100507629 | 231458_at | 0.0091 | 0.9822 | |
| GSE26886 | LINC00658 | 100507629 | 231458_at | 0.1482 | 0.1561 | |
| GSE45670 | LINC00658 | 100507629 | 231458_at | 0.0238 | 0.8295 | |
| GSE53622 | LINC00658 | 100507629 | 54391 | -0.0222 | 0.8287 | |
| GSE53624 | LINC00658 | 100507629 | 54391 | -0.2461 | 0.0009 | |
| GSE63941 | LINC00658 | 100507629 | 231458_at | -0.0331 | 0.8617 | |
| GSE77861 | LINC00658 | 100507629 | 231458_at | -0.1688 | 0.2135 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00658 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00658:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00658 | 100507629 | 10 | 3 | 17 | |
| GSE20123 | LINC00658 | 100507629 | 10 | 3 | 17 | |
| GSE43470 | LINC00658 | 100507629 | 10 | 1 | 32 | |
| GSE46452 | LINC00658 | 100507629 | 26 | 1 | 32 | |
| GSE47630 | LINC00658 | 100507629 | 18 | 4 | 18 | |
| GSE54993 | LINC00658 | 100507629 | 2 | 14 | 54 | |
| GSE54994 | LINC00658 | 100507629 | 25 | 2 | 26 | |
| GSE60625 | LINC00658 | 100507629 | 0 | 0 | 11 | |
| GSE74703 | LINC00658 | 100507629 | 9 | 1 | 26 | |
| GSE74704 | LINC00658 | 100507629 | 5 | 1 | 14 | |
| TCGA | LINC00658 | 100507629 | 40 | 11 | 45 |
Total number of gains: 155; Total number of losses: 41; Total Number of normals: 292.
Somatic mutations of LINC00658:
Generating mutation plots.
Highly correlated genes for LINC00658:
Showing top 20/28 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00658 | CPNE6 | 0.718106 | 3 | 0 | 3 |
| LINC00658 | FAM216B | 0.715249 | 3 | 0 | 3 |
| LINC00658 | ADAMTSL5 | 0.647277 | 4 | 0 | 3 |
| LINC00658 | IGFN1 | 0.633911 | 3 | 0 | 3 |
| LINC00658 | KCNJ4 | 0.633086 | 3 | 0 | 3 |
| LINC00658 | LIM2 | 0.62763 | 3 | 0 | 3 |
| LINC00658 | LINC00997 | 0.622349 | 3 | 0 | 3 |
| LINC00658 | VGF | 0.619011 | 3 | 0 | 3 |
| LINC00658 | SLC9A3 | 0.609312 | 3 | 0 | 3 |
| LINC00658 | C9orf131 | 0.597835 | 4 | 0 | 3 |
| LINC00658 | NKX2-8 | 0.594308 | 4 | 0 | 3 |
| LINC00658 | FAM171A2 | 0.59145 | 4 | 0 | 3 |
| LINC00658 | SLC22A6 | 0.590346 | 3 | 0 | 3 |
| LINC00658 | HMX1 | 0.583177 | 3 | 0 | 3 |
| LINC00658 | GLTPD2 | 0.576378 | 4 | 0 | 3 |
| LINC00658 | ADAMTS7 | 0.570101 | 4 | 0 | 3 |
| LINC00658 | SMIM6 | 0.559286 | 4 | 0 | 3 |
| LINC00658 | ABCC6 | 0.556663 | 3 | 0 | 3 |
| LINC00658 | C16orf82 | 0.550506 | 3 | 0 | 3 |
| LINC00658 | TNNI3 | 0.546998 | 4 | 0 | 3 |
For details and further investigation, click here
