| Full name: long intergenic non-protein coding RNA 997 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 7p14.3 | ||
| Entrez ID: 401321 | HGNC ID: HGNC:48952 | Ensembl Gene: ENSG00000281332 | OMIM ID: |
Expression of LINC00997:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00997 | 401321 | 1560371_at | -0.0571 | 0.8977 | |
| GSE26886 | LINC00997 | 401321 | 232255_at | 0.0718 | 0.5200 | |
| GSE45670 | LINC00997 | 401321 | 232255_at | 0.0444 | 0.6339 | |
| GSE63941 | LINC00997 | 401321 | 1560371_at | 0.0949 | 0.7772 | |
| GSE77861 | LINC00997 | 401321 | 232255_at | -0.1145 | 0.2478 | |
| SRP007169 | LINC00997 | 401321 | RNAseq | 0.4665 | 0.5076 | |
| SRP064894 | LINC00997 | 401321 | RNAseq | 0.1919 | 0.1622 | |
| SRP133303 | LINC00997 | 401321 | RNAseq | 0.3763 | 0.0048 | |
| SRP159526 | LINC00997 | 401321 | RNAseq | 0.4915 | 0.1456 | |
| SRP193095 | LINC00997 | 401321 | RNAseq | 0.4016 | 0.0016 | |
| SRP219564 | LINC00997 | 401321 | RNAseq | -0.0561 | 0.8476 |
Upregulated datasets: 0; Downregulated datasets: 0.
Copy number change of LINC00997:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00997 | 401321 | 16 | 0 | 14 | |
| GSE20123 | LINC00997 | 401321 | 16 | 0 | 14 | |
| GSE43470 | LINC00997 | 401321 | 4 | 0 | 39 | |
| GSE46452 | LINC00997 | 401321 | 11 | 1 | 47 | |
| GSE47630 | LINC00997 | 401321 | 8 | 1 | 31 | |
| GSE54993 | LINC00997 | 401321 | 0 | 6 | 64 | |
| GSE54994 | LINC00997 | 401321 | 20 | 2 | 31 | |
| GSE60625 | LINC00997 | 401321 | 0 | 0 | 11 | |
| GSE74703 | LINC00997 | 401321 | 4 | 0 | 32 | |
| GSE74704 | LINC00997 | 401321 | 10 | 0 | 10 |
Total number of gains: 89; Total number of losses: 10; Total Number of normals: 293.
Somatic mutations of LINC00997:
Generating mutation plots.
Highly correlated genes for LINC00997:
Showing top 20/22 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00997 | NKD1 | 0.650312 | 3 | 0 | 3 |
| LINC00997 | TRH | 0.643739 | 3 | 0 | 3 |
| LINC00997 | VIPR2 | 0.625591 | 3 | 0 | 3 |
| LINC00997 | ELMOD3 | 0.625564 | 3 | 0 | 3 |
| LINC00997 | LINC00658 | 0.622349 | 3 | 0 | 3 |
| LINC00997 | BPY2 | 0.619308 | 3 | 0 | 3 |
| LINC00997 | SMIM6 | 0.618375 | 3 | 0 | 3 |
| LINC00997 | PHEX | 0.604314 | 3 | 0 | 3 |
| LINC00997 | DACT3 | 0.601646 | 3 | 0 | 3 |
| LINC00997 | NKAIN4 | 0.586817 | 4 | 0 | 3 |
| LINC00997 | SPX | 0.579753 | 3 | 0 | 3 |
| LINC00997 | SNAI1 | 0.579256 | 3 | 0 | 3 |
| LINC00997 | DAB2IP | 0.568525 | 3 | 0 | 3 |
| LINC00997 | REEP2 | 0.561943 | 4 | 0 | 3 |
| LINC00997 | MPL | 0.549927 | 3 | 0 | 3 |
| LINC00997 | METRN | 0.54088 | 3 | 0 | 3 |
| LINC00997 | LINC00922 | 0.532765 | 3 | 0 | 3 |
| LINC00997 | SIRT3 | 0.531301 | 3 | 0 | 3 |
| LINC00997 | ADAMTSL5 | 0.523013 | 4 | 0 | 3 |
| LINC00997 | FRMD1 | 0.521042 | 4 | 0 | 3 |
For details and further investigation, click here
