LINC00667

 

Full name: long intergenic non-protein coding RNA 667 Alias Symbol: 
Type: non-coding RNA Cytoband: 18p11.31
Entrez ID: 339290 HGNC ID: HGNC:27906 Ensembl Gene: ENSG00000263753 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00667:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00667 339290 226235_at -0.4791 0.4376
GSE20347 LINC00667 339290 215283_at 0.5117 0.0014
GSE23400 LINC00667 339290 215283_at 0.1977 0.0000
GSE26886 LINC00667 339290 226235_at 0.0957 0.6399
GSE29001 LINC00667 339290 215283_at 0.6288 0.0428
GSE38129 LINC00667 339290 215283_at 0.3874 0.0074
GSE45670 LINC00667 339290 226235_at 0.0387 0.8768
GSE53622 LINC00667 339290 69174 -0.3602 0.0148
GSE53624 LINC00667 339290 69174 -0.0383 0.7169
GSE63941 LINC00667 339290 226235_at -0.5914 0.5575
GSE77861 LINC00667 339290 226235_at 0.2324 0.5551
SRP007169 LINC00667 339290 RNAseq 1.3990 0.0246
SRP064894 LINC00667 339290 RNAseq -0.1263 0.5688
SRP133303 LINC00667 339290 RNAseq 0.0339 0.8074
SRP159526 LINC00667 339290 RNAseq 0.6972 0.0271
SRP193095 LINC00667 339290 RNAseq 0.3601 0.0004
SRP219564 LINC00667 339290 RNAseq -0.1239 0.7889

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by LINC00667 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00667:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00667 339290 8 2 20
GSE20123 LINC00667 339290 8 2 20
GSE43470 LINC00667 339290 4 5 34
GSE46452 LINC00667 339290 3 21 35
GSE47630 LINC00667 339290 7 17 16
GSE54993 LINC00667 339290 6 3 61
GSE54994 LINC00667 339290 11 8 34
GSE60625 LINC00667 339290 0 4 7
GSE74703 LINC00667 339290 3 3 30
GSE74704 LINC00667 339290 6 1 13
TCGA LINC00667 339290 34 19 43

Total number of gains: 90; Total number of losses: 85; Total Number of normals: 313.  

 

Somatic mutations of LINC00667:

 

Generating mutation plots.

 

Highly correlated genes for LINC00667:

 

Showing top 20/51 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00667AIP0.7227303
LINC00667GPC40.711361303
LINC00667COLEC110.69872303
LINC00667KHDRBS30.686821303
LINC00667LIFR0.66671403
LINC00667LINC005260.657265605
LINC00667WIF10.654851303
LINC00667CXCR40.641642303
LINC00667ECE10.630718303
LINC00667SGCB0.626967404
LINC00667OLFM10.623958303
LINC00667MAPKAPK5-AS10.622029404
LINC00667CLDN30.618799303
LINC00667CHRM30.61717403
LINC00667CHKA0.616159504
LINC00667THBS40.613771303
LINC00667REXO40.607271303
LINC00667MANBA0.603121403
LINC00667TRIM450.600514504
LINC00667RAB200.582956303

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