| Full name: RAB20, member RAS oncogene family | Alias Symbol: FLJ20429 | ||
| Type: protein-coding gene | Cytoband: 13q34 | ||
| Entrez ID: 55647 | HGNC ID: HGNC:18260 | Ensembl Gene: ENSG00000139832 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of RAB20:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RAB20 | 55647 | 219622_at | -0.0031 | 0.9973 | |
| GSE20347 | RAB20 | 55647 | 219622_at | 0.7692 | 0.0035 | |
| GSE23400 | RAB20 | 55647 | 219622_at | 0.0986 | 0.0650 | |
| GSE26886 | RAB20 | 55647 | 219622_at | 1.6304 | 0.0000 | |
| GSE29001 | RAB20 | 55647 | 219622_at | 0.7800 | 0.0019 | |
| GSE38129 | RAB20 | 55647 | 219622_at | 0.5609 | 0.0374 | |
| GSE45670 | RAB20 | 55647 | 219622_at | 0.0337 | 0.9261 | |
| GSE53622 | RAB20 | 55647 | 61625 | 0.7112 | 0.0000 | |
| GSE53624 | RAB20 | 55647 | 61625 | 0.7076 | 0.0000 | |
| GSE63941 | RAB20 | 55647 | 219622_at | 1.4089 | 0.0514 | |
| GSE77861 | RAB20 | 55647 | 219622_at | 0.3520 | 0.1209 | |
| GSE97050 | RAB20 | 55647 | A_24_P22050 | 0.3556 | 0.3701 | |
| SRP007169 | RAB20 | 55647 | RNAseq | 3.2540 | 0.0002 | |
| SRP064894 | RAB20 | 55647 | RNAseq | 1.0745 | 0.0004 | |
| SRP133303 | RAB20 | 55647 | RNAseq | 1.0242 | 0.0000 | |
| SRP159526 | RAB20 | 55647 | RNAseq | 0.4707 | 0.2989 | |
| SRP193095 | RAB20 | 55647 | RNAseq | 0.0112 | 0.9802 | |
| SRP219564 | RAB20 | 55647 | RNAseq | 1.3476 | 0.0224 | |
| TCGA | RAB20 | 55647 | RNAseq | -0.5731 | 0.0000 |
Upregulated datasets: 5; Downregulated datasets: 0.
Survival by RAB20 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RAB20:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RAB20 | 55647 | 6 | 11 | 13 | |
| GSE20123 | RAB20 | 55647 | 6 | 10 | 14 | |
| GSE43470 | RAB20 | 55647 | 4 | 13 | 26 | |
| GSE46452 | RAB20 | 55647 | 2 | 31 | 26 | |
| GSE47630 | RAB20 | 55647 | 3 | 26 | 11 | |
| GSE54993 | RAB20 | 55647 | 11 | 4 | 55 | |
| GSE54994 | RAB20 | 55647 | 8 | 8 | 37 | |
| GSE60625 | RAB20 | 55647 | 0 | 3 | 8 | |
| GSE74703 | RAB20 | 55647 | 3 | 9 | 24 | |
| GSE74704 | RAB20 | 55647 | 4 | 9 | 7 | |
| TCGA | RAB20 | 55647 | 19 | 33 | 44 |
Total number of gains: 66; Total number of losses: 157; Total Number of normals: 265.
Somatic mutations of RAB20:
Generating mutation plots.
Highly correlated genes for RAB20:
Showing top 20/886 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RAB20 | SORBS3 | 0.732531 | 3 | 0 | 3 |
| RAB20 | KDM6B | 0.72512 | 3 | 0 | 3 |
| RAB20 | ECSIT | 0.72264 | 3 | 0 | 3 |
| RAB20 | DDX60L | 0.719933 | 3 | 0 | 3 |
| RAB20 | CIC | 0.705279 | 3 | 0 | 3 |
| RAB20 | CHD3 | 0.699647 | 3 | 0 | 3 |
| RAB20 | SNRPD2 | 0.695479 | 3 | 0 | 3 |
| RAB20 | STAT2 | 0.691454 | 3 | 0 | 3 |
| RAB20 | DOCK11 | 0.688319 | 5 | 0 | 4 |
| RAB20 | BLACAT1 | 0.680156 | 4 | 0 | 3 |
| RAB20 | SSBP4 | 0.679611 | 4 | 0 | 3 |
| RAB20 | NRM | 0.676915 | 5 | 0 | 5 |
| RAB20 | C3 | 0.671872 | 4 | 0 | 4 |
| RAB20 | CXCL16 | 0.670897 | 4 | 0 | 4 |
| RAB20 | MIER2 | 0.670683 | 3 | 0 | 3 |
| RAB20 | PET117 | 0.669663 | 3 | 0 | 3 |
| RAB20 | TBX1 | 0.669049 | 3 | 0 | 3 |
| RAB20 | ASB7 | 0.66795 | 3 | 0 | 3 |
| RAB20 | TES | 0.666399 | 4 | 0 | 3 |
| RAB20 | CDON | 0.666103 | 3 | 0 | 3 |
For details and further investigation, click here
