| Full name: long intergenic non-protein coding RNA 880 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 3q25.31 | ||
| Entrez ID: 339894 | HGNC ID: HGNC:27948 | Ensembl Gene: ENSG00000243629 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00880:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00880 | 339894 | 1561402_at | 0.1956 | 0.3206 | |
| GSE26886 | LINC00880 | 339894 | 1561402_at | 0.2365 | 0.0292 | |
| GSE45670 | LINC00880 | 339894 | 1561402_at | 0.0998 | 0.3187 | |
| GSE53622 | LINC00880 | 339894 | 34963 | 0.3979 | 0.0165 | |
| GSE53624 | LINC00880 | 339894 | 34963 | 0.6801 | 0.0000 | |
| GSE63941 | LINC00880 | 339894 | 1561402_at | 0.2231 | 0.1497 | |
| GSE77861 | LINC00880 | 339894 | 1561402_at | -0.1096 | 0.3095 | |
| SRP133303 | LINC00880 | 339894 | RNAseq | 0.1309 | 0.5163 | |
| SRP193095 | LINC00880 | 339894 | RNAseq | 0.1893 | 0.2159 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00880 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00880:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00880 | 339894 | 21 | 1 | 8 | |
| GSE20123 | LINC00880 | 339894 | 21 | 1 | 8 | |
| GSE43470 | LINC00880 | 339894 | 23 | 0 | 20 | |
| GSE46452 | LINC00880 | 339894 | 18 | 2 | 39 | |
| GSE47630 | LINC00880 | 339894 | 19 | 3 | 18 | |
| GSE54993 | LINC00880 | 339894 | 1 | 11 | 58 | |
| GSE54994 | LINC00880 | 339894 | 38 | 1 | 14 | |
| GSE60625 | LINC00880 | 339894 | 0 | 6 | 5 | |
| GSE74703 | LINC00880 | 339894 | 20 | 0 | 16 | |
| GSE74704 | LINC00880 | 339894 | 14 | 0 | 6 | |
| TCGA | LINC00880 | 339894 | 74 | 1 | 21 |
Total number of gains: 249; Total number of losses: 26; Total Number of normals: 213.
Somatic mutations of LINC00880:
Generating mutation plots.
Highly correlated genes for LINC00880:
Showing all 18 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00880 | GLDN | 0.645319 | 3 | 0 | 3 |
| LINC00880 | TMEM179 | 0.641185 | 3 | 0 | 3 |
| LINC00880 | CNIH2 | 0.611754 | 3 | 0 | 3 |
| LINC00880 | PTP4A3 | 0.603835 | 3 | 0 | 3 |
| LINC00880 | SSTR5 | 0.597967 | 3 | 0 | 3 |
| LINC00880 | MMP11 | 0.577219 | 4 | 0 | 3 |
| LINC00880 | POU5F1B | 0.576905 | 3 | 0 | 3 |
| LINC00880 | NLRP14 | 0.56474 | 3 | 0 | 3 |
| LINC00880 | SPP2 | 0.563272 | 3 | 0 | 3 |
| LINC00880 | PXT1 | 0.561399 | 3 | 0 | 3 |
| LINC00880 | EGR4 | 0.559786 | 4 | 0 | 3 |
| LINC00880 | LINC01191 | 0.554179 | 3 | 0 | 3 |
| LINC00880 | ANGPT4 | 0.547894 | 3 | 0 | 3 |
| LINC00880 | CLEC11A | 0.546236 | 5 | 0 | 3 |
| LINC00880 | RHAG | 0.536966 | 4 | 0 | 3 |
| LINC00880 | EIF3H | 0.534858 | 3 | 0 | 3 |
| LINC00880 | SLC7A13 | 0.517071 | 3 | 0 | 3 |
| LINC00880 | ZNF683 | 0.508021 | 4 | 0 | 3 |
For details and further investigation, click here
