| Full name: long intergenic non-protein coding RNA 958 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 11p15.3 | ||
| Entrez ID: 100506305 | HGNC ID: HGNC:48671 | Ensembl Gene: ENSG00000251381 | OMIM ID: 618335 |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00958:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00958 | 100506305 | 231924_at | 0.2332 | 0.5798 | |
| GSE26886 | LINC00958 | 100506305 | 231924_at | 0.5212 | 0.0293 | |
| GSE45670 | LINC00958 | 100506305 | 231924_at | 0.4709 | 0.0057 | |
| GSE53622 | LINC00958 | 100506305 | 63060 | 0.5402 | 0.0017 | |
| GSE53624 | LINC00958 | 100506305 | 6175 | 0.4597 | 0.0011 | |
| GSE63941 | LINC00958 | 100506305 | 231924_at | 1.1093 | 0.1991 | |
| GSE77861 | LINC00958 | 100506305 | 231924_at | 0.1668 | 0.3541 | |
| SRP007169 | LINC00958 | 100506305 | RNAseq | -0.8547 | 0.1858 | |
| SRP008496 | LINC00958 | 100506305 | RNAseq | -0.3312 | 0.4301 | |
| SRP064894 | LINC00958 | 100506305 | RNAseq | -0.1570 | 0.6832 | |
| SRP133303 | LINC00958 | 100506305 | RNAseq | 1.0210 | 0.0120 | |
| SRP159526 | LINC00958 | 100506305 | RNAseq | -0.3906 | 0.4771 | |
| SRP193095 | LINC00958 | 100506305 | RNAseq | 0.3787 | 0.2311 | |
| SRP219564 | LINC00958 | 100506305 | RNAseq | -0.2578 | 0.8059 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by LINC00958 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00958:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00958 | 100506305 | 0 | 8 | 22 | |
| GSE20123 | LINC00958 | 100506305 | 0 | 8 | 22 | |
| GSE43470 | LINC00958 | 100506305 | 1 | 5 | 37 | |
| GSE46452 | LINC00958 | 100506305 | 7 | 5 | 47 | |
| GSE47630 | LINC00958 | 100506305 | 3 | 11 | 26 | |
| GSE54993 | LINC00958 | 100506305 | 3 | 1 | 66 | |
| GSE54994 | LINC00958 | 100506305 | 4 | 12 | 37 | |
| GSE60625 | LINC00958 | 100506305 | 0 | 0 | 11 | |
| GSE74703 | LINC00958 | 100506305 | 1 | 3 | 32 | |
| GSE74704 | LINC00958 | 100506305 | 0 | 7 | 13 | |
| TCGA | LINC00958 | 100506305 | 13 | 31 | 52 |
Total number of gains: 32; Total number of losses: 91; Total Number of normals: 365.
Somatic mutations of LINC00958:
Generating mutation plots.
Highly correlated genes for LINC00958:
Showing top 20/67 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00958 | KPNA1 | 0.688558 | 3 | 0 | 3 |
| LINC00958 | CATSPERB | 0.680791 | 3 | 0 | 3 |
| LINC00958 | C3orf52 | 0.668033 | 3 | 0 | 3 |
| LINC00958 | LIN37 | 0.646275 | 3 | 0 | 3 |
| LINC00958 | SRP19 | 0.644354 | 4 | 0 | 3 |
| LINC00958 | DCAF5 | 0.637714 | 3 | 0 | 3 |
| LINC00958 | LTB4R2 | 0.628628 | 3 | 0 | 3 |
| LINC00958 | STON2 | 0.625795 | 5 | 0 | 4 |
| LINC00958 | RRAS2 | 0.622433 | 3 | 0 | 3 |
| LINC00958 | ZNF593 | 0.617121 | 3 | 0 | 3 |
| LINC00958 | FRMD6-AS1 | 0.610844 | 4 | 0 | 3 |
| LINC00958 | RIN1 | 0.608335 | 5 | 0 | 4 |
| LINC00958 | CEP164 | 0.608055 | 3 | 0 | 3 |
| LINC00958 | FJX1 | 0.602788 | 4 | 0 | 3 |
| LINC00958 | ZMYND19 | 0.598439 | 3 | 0 | 3 |
| LINC00958 | NOC4L | 0.5918 | 3 | 0 | 3 |
| LINC00958 | LPAR3 | 0.584911 | 5 | 0 | 3 |
| LINC00958 | VCPKMT | 0.58073 | 4 | 0 | 3 |
| LINC00958 | MCM4 | 0.575494 | 5 | 0 | 4 |
| LINC00958 | PSMG1 | 0.57378 | 3 | 0 | 3 |
For details and further investigation, click here
