| Full name: long intergenic non-protein coding RNA 1000 | Alias Symbol: FLJ45340 | ||
| Type: non-coding RNA | Cytoband: 7q32.1 | ||
| Entrez ID: 402483 | HGNC ID: HGNC:38541 | Ensembl Gene: | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC01000:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC01000 | 402483 | 227129_x_at | 0.2305 | 0.7175 | |
| GSE26886 | LINC01000 | 402483 | 227129_x_at | 0.0071 | 0.9840 | |
| GSE45670 | LINC01000 | 402483 | 227129_x_at | 0.0626 | 0.7911 | |
| GSE63941 | LINC01000 | 402483 | 227129_x_at | 1.5180 | 0.0046 | |
| GSE77861 | LINC01000 | 402483 | 227129_x_at | 0.5371 | 0.0893 | |
| SRP007169 | LINC01000 | 402483 | RNAseq | -0.0212 | 0.9559 | |
| SRP008496 | LINC01000 | 402483 | RNAseq | -0.1032 | 0.7499 | |
| SRP064894 | LINC01000 | 402483 | RNAseq | -0.0338 | 0.8862 | |
| SRP133303 | LINC01000 | 402483 | RNAseq | -0.3495 | 0.0087 | |
| SRP159526 | LINC01000 | 402483 | RNAseq | -0.4574 | 0.0652 | |
| SRP193095 | LINC01000 | 402483 | RNAseq | 0.2771 | 0.1782 | |
| SRP219564 | LINC01000 | 402483 | RNAseq | -0.0174 | 0.9609 |
Upregulated datasets: 1; Downregulated datasets: 0.
Copy number change of LINC01000:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC01000 | 402483 | 8 | 1 | 21 | |
| GSE20123 | LINC01000 | 402483 | 8 | 1 | 21 | |
| GSE43470 | LINC01000 | 402483 | 2 | 3 | 38 | |
| GSE46452 | LINC01000 | 402483 | 7 | 2 | 50 | |
| GSE47630 | LINC01000 | 402483 | 7 | 4 | 29 | |
| GSE54993 | LINC01000 | 402483 | 3 | 5 | 62 | |
| GSE54994 | LINC01000 | 402483 | 8 | 7 | 38 | |
| GSE60625 | LINC01000 | 402483 | 0 | 0 | 11 | |
| GSE74703 | LINC01000 | 402483 | 2 | 3 | 31 | |
| GSE74704 | LINC01000 | 402483 | 4 | 1 | 15 |
Total number of gains: 49; Total number of losses: 27; Total Number of normals: 316.
Somatic mutations of LINC01000:
Generating mutation plots.
Highly correlated genes for LINC01000:
Showing top 20/30 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC01000 | PRKX | 0.691425 | 3 | 0 | 3 |
| LINC01000 | ARHGEF16 | 0.678897 | 3 | 0 | 3 |
| LINC01000 | ATP2A2 | 0.672273 | 3 | 0 | 3 |
| LINC01000 | LSR | 0.665446 | 3 | 0 | 3 |
| LINC01000 | PSMC4 | 0.659039 | 3 | 0 | 3 |
| LINC01000 | TCF20 | 0.658773 | 3 | 0 | 3 |
| LINC01000 | SPINT2 | 0.65443 | 3 | 0 | 3 |
| LINC01000 | MYO19 | 0.651957 | 3 | 0 | 3 |
| LINC01000 | PSMD11 | 0.637634 | 3 | 0 | 3 |
| LINC01000 | IRF3 | 0.635667 | 3 | 0 | 3 |
| LINC01000 | MIA3 | 0.618139 | 3 | 0 | 3 |
| LINC01000 | PTPN6 | 0.609348 | 3 | 0 | 3 |
| LINC01000 | FXYD3 | 0.603309 | 4 | 0 | 3 |
| LINC01000 | OCIAD2 | 0.601226 | 3 | 0 | 3 |
| LINC01000 | B4GALT3 | 0.594437 | 3 | 0 | 3 |
| LINC01000 | SAPCD2 | 0.590601 | 3 | 0 | 3 |
| LINC01000 | SDC1 | 0.589299 | 3 | 0 | 3 |
| LINC01000 | IGSF9 | 0.587412 | 4 | 0 | 3 |
| LINC01000 | MARK1 | 0.587403 | 3 | 0 | 3 |
| LINC01000 | CLK2 | 0.577933 | 3 | 0 | 3 |
For details and further investigation, click here
