| Full name: opsin 1, short wave sensitive | Alias Symbol: BOP|CBT | ||
| Type: protein-coding gene | Cytoband: 7q32.1 | ||
| Entrez ID: 611 | HGNC ID: HGNC:1012 | Ensembl Gene: ENSG00000128617 | OMIM ID: 613522 |
| Drug and gene relationship at DGIdb | |||
Expression of OPN1SW:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | OPN1SW | 611 | 208036_at | -0.2408 | 0.3709 | |
| GSE20347 | OPN1SW | 611 | 208036_at | -0.1457 | 0.0319 | |
| GSE23400 | OPN1SW | 611 | 208036_at | -0.1600 | 0.0000 | |
| GSE26886 | OPN1SW | 611 | 208036_at | -0.0794 | 0.4647 | |
| GSE29001 | OPN1SW | 611 | 208036_at | -0.1250 | 0.1723 | |
| GSE38129 | OPN1SW | 611 | 208036_at | -0.2383 | 0.0003 | |
| GSE45670 | OPN1SW | 611 | 208036_at | -0.0882 | 0.3203 | |
| GSE53622 | OPN1SW | 611 | 151595 | 0.1524 | 0.1294 | |
| GSE53624 | OPN1SW | 611 | 151595 | 0.1747 | 0.0065 | |
| GSE63941 | OPN1SW | 611 | 208036_at | -0.2053 | 0.2311 | |
| GSE77861 | OPN1SW | 611 | 208036_at | -0.1590 | 0.1721 | |
| TCGA | OPN1SW | 611 | RNAseq | -0.5391 | 0.1256 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by OPN1SW expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of OPN1SW:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | OPN1SW | 611 | 8 | 1 | 21 | |
| GSE20123 | OPN1SW | 611 | 8 | 1 | 21 | |
| GSE43470 | OPN1SW | 611 | 2 | 3 | 38 | |
| GSE46452 | OPN1SW | 611 | 7 | 2 | 50 | |
| GSE47630 | OPN1SW | 611 | 7 | 4 | 29 | |
| GSE54993 | OPN1SW | 611 | 3 | 5 | 62 | |
| GSE54994 | OPN1SW | 611 | 8 | 7 | 38 | |
| GSE60625 | OPN1SW | 611 | 0 | 0 | 11 | |
| GSE74703 | OPN1SW | 611 | 2 | 3 | 31 | |
| GSE74704 | OPN1SW | 611 | 4 | 1 | 15 | |
| TCGA | OPN1SW | 611 | 28 | 22 | 46 |
Total number of gains: 77; Total number of losses: 49; Total Number of normals: 362.
Somatic mutations of OPN1SW:
Generating mutation plots.
Highly correlated genes for OPN1SW:
Showing top 20/306 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| OPN1SW | CHIC2 | 0.667066 | 3 | 0 | 3 |
| OPN1SW | LPO | 0.660453 | 3 | 0 | 3 |
| OPN1SW | MUC17 | 0.659987 | 4 | 0 | 3 |
| OPN1SW | OR7C1 | 0.653588 | 3 | 0 | 3 |
| OPN1SW | ART1 | 0.652834 | 3 | 0 | 3 |
| OPN1SW | STRN | 0.6346 | 3 | 0 | 3 |
| OPN1SW | COL19A1 | 0.623733 | 3 | 0 | 3 |
| OPN1SW | FAM222A-AS1 | 0.62208 | 3 | 0 | 3 |
| OPN1SW | GPR12 | 0.619794 | 4 | 0 | 4 |
| OPN1SW | HMGCS1 | 0.619632 | 4 | 0 | 3 |
| OPN1SW | MSMO1 | 0.61761 | 5 | 0 | 3 |
| OPN1SW | FAM205A | 0.612166 | 3 | 0 | 3 |
| OPN1SW | PROCA1 | 0.611398 | 3 | 0 | 3 |
| OPN1SW | KLF15 | 0.607347 | 3 | 0 | 3 |
| OPN1SW | ATP6V1G1 | 0.605101 | 3 | 0 | 3 |
| OPN1SW | RALGPS2 | 0.605025 | 3 | 0 | 3 |
| OPN1SW | PRDM14 | 0.6046 | 5 | 0 | 4 |
| OPN1SW | CDKL5 | 0.601188 | 4 | 0 | 4 |
| OPN1SW | ZMYND10 | 0.598918 | 3 | 0 | 3 |
| OPN1SW | CER1 | 0.5981 | 3 | 0 | 3 |
For details and further investigation, click here
