| Full name: protocadherin 9 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 13q21.32 | ||
| Entrez ID: 5101 | HGNC ID: HGNC:8661 | Ensembl Gene: ENSG00000184226 | OMIM ID: 603581 |
| Drug and gene relationship at DGIdb | |||
Expression of PCDH9:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PCDH9 | 5101 | 219737_s_at | -1.0950 | 0.5682 | |
| GSE20347 | PCDH9 | 5101 | 219737_s_at | 0.1583 | 0.6172 | |
| GSE23400 | PCDH9 | 5101 | 219737_s_at | -0.5105 | 0.0010 | |
| GSE26886 | PCDH9 | 5101 | 219737_s_at | 0.3780 | 0.0497 | |
| GSE29001 | PCDH9 | 5101 | 219737_s_at | -0.1978 | 0.7409 | |
| GSE38129 | PCDH9 | 5101 | 219737_s_at | -0.9152 | 0.0478 | |
| GSE45670 | PCDH9 | 5101 | 219737_s_at | -1.7960 | 0.0000 | |
| GSE53622 | PCDH9 | 5101 | 45517 | -1.5452 | 0.0000 | |
| GSE53624 | PCDH9 | 5101 | 45517 | -1.6579 | 0.0000 | |
| GSE63941 | PCDH9 | 5101 | 219737_s_at | -3.7881 | 0.0002 | |
| GSE77861 | PCDH9 | 5101 | 219737_s_at | 0.1238 | 0.3073 | |
| GSE97050 | PCDH9 | 5101 | A_33_P3236661 | -0.9420 | 0.1584 | |
| SRP007169 | PCDH9 | 5101 | RNAseq | 3.6136 | 0.0001 | |
| SRP064894 | PCDH9 | 5101 | RNAseq | 0.6179 | 0.1452 | |
| SRP133303 | PCDH9 | 5101 | RNAseq | -0.9729 | 0.0012 | |
| SRP159526 | PCDH9 | 5101 | RNAseq | 0.6241 | 0.3550 | |
| SRP193095 | PCDH9 | 5101 | RNAseq | 1.3464 | 0.0006 | |
| SRP219564 | PCDH9 | 5101 | RNAseq | -0.2211 | 0.8481 | |
| TCGA | PCDH9 | 5101 | RNAseq | -1.5980 | 0.0001 |
Upregulated datasets: 2; Downregulated datasets: 5.
Survival by PCDH9 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of PCDH9:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PCDH9 | 5101 | 3 | 13 | 14 | |
| GSE20123 | PCDH9 | 5101 | 3 | 12 | 15 | |
| GSE43470 | PCDH9 | 5101 | 2 | 12 | 29 | |
| GSE46452 | PCDH9 | 5101 | 0 | 32 | 27 | |
| GSE47630 | PCDH9 | 5101 | 3 | 26 | 11 | |
| GSE54993 | PCDH9 | 5101 | 11 | 3 | 56 | |
| GSE54994 | PCDH9 | 5101 | 3 | 12 | 38 | |
| GSE60625 | PCDH9 | 5101 | 0 | 3 | 8 | |
| GSE74703 | PCDH9 | 5101 | 1 | 10 | 25 | |
| GSE74704 | PCDH9 | 5101 | 1 | 11 | 8 | |
| TCGA | PCDH9 | 5101 | 12 | 34 | 50 |
Total number of gains: 39; Total number of losses: 168; Total Number of normals: 281.
Somatic mutations of PCDH9:
Generating mutation plots.
Highly correlated genes for PCDH9:
Showing top 20/1033 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PCDH9 | CNTN3 | 0.87457 | 3 | 0 | 3 |
| PCDH9 | MAP1A | 0.833515 | 6 | 0 | 6 |
| PCDH9 | KIRREL3 | 0.822258 | 3 | 0 | 3 |
| PCDH9 | ZNF660 | 0.814788 | 3 | 0 | 3 |
| PCDH9 | ADAMTSL1 | 0.81302 | 5 | 0 | 5 |
| PCDH9 | TBX5-AS1 | 0.806876 | 4 | 0 | 4 |
| PCDH9 | SHISA3 | 0.802317 | 4 | 0 | 4 |
| PCDH9 | RBM24 | 0.788708 | 5 | 0 | 5 |
| PCDH9 | PABPC5 | 0.784682 | 4 | 0 | 3 |
| PCDH9 | LRCH1 | 0.783759 | 4 | 0 | 4 |
| PCDH9 | LRRN4CL | 0.781817 | 6 | 0 | 6 |
| PCDH9 | FLNC | 0.781471 | 9 | 0 | 8 |
| PCDH9 | OMD | 0.779322 | 6 | 0 | 6 |
| PCDH9 | NEGR1 | 0.776896 | 6 | 0 | 5 |
| PCDH9 | NEXN | 0.775131 | 6 | 0 | 6 |
| PCDH9 | EPM2A | 0.774236 | 5 | 0 | 5 |
| PCDH9 | HSPB7 | 0.76762 | 9 | 0 | 9 |
| PCDH9 | SGCD | 0.765831 | 7 | 0 | 7 |
| PCDH9 | FGL2 | 0.765064 | 8 | 0 | 8 |
| PCDH9 | NFASC | 0.761491 | 6 | 0 | 6 |
For details and further investigation, click here
