| Full name: POP4 homolog, ribonuclease P/MRP subunit | Alias Symbol: RPP29 | ||
| Type: protein-coding gene | Cytoband: 19q12 | ||
| Entrez ID: 10775 | HGNC ID: HGNC:30081 | Ensembl Gene: ENSG00000105171 | OMIM ID: 606114 |
Screen Evidence:
| |||
Expression of POP4:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | POP4 | 10775 | 202868_s_at | -0.0043 | 0.9959 | |
| GSE20347 | POP4 | 10775 | 202868_s_at | -0.2510 | 0.1031 | |
| GSE23400 | POP4 | 10775 | 202868_s_at | 0.2404 | 0.0136 | |
| GSE26886 | POP4 | 10775 | 202868_s_at | -0.3621 | 0.0178 | |
| GSE29001 | POP4 | 10775 | 202868_s_at | -0.0221 | 0.9284 | |
| GSE38129 | POP4 | 10775 | 202868_s_at | 0.0009 | 0.9959 | |
| GSE45670 | POP4 | 10775 | 202868_s_at | 0.0753 | 0.5840 | |
| GSE53622 | POP4 | 10775 | 73256 | -0.1854 | 0.0162 | |
| GSE53624 | POP4 | 10775 | 73256 | 0.0189 | 0.7984 | |
| GSE63941 | POP4 | 10775 | 202868_s_at | 0.1235 | 0.7943 | |
| GSE77861 | POP4 | 10775 | 202868_s_at | -0.2455 | 0.2398 | |
| GSE97050 | POP4 | 10775 | A_23_P90533 | 0.0478 | 0.8362 | |
| SRP007169 | POP4 | 10775 | RNAseq | 0.8832 | 0.0560 | |
| SRP008496 | POP4 | 10775 | RNAseq | 0.5156 | 0.1817 | |
| SRP064894 | POP4 | 10775 | RNAseq | 0.2009 | 0.3588 | |
| SRP133303 | POP4 | 10775 | RNAseq | -0.0123 | 0.9112 | |
| SRP159526 | POP4 | 10775 | RNAseq | 0.3075 | 0.3105 | |
| SRP193095 | POP4 | 10775 | RNAseq | -0.2522 | 0.0428 | |
| SRP219564 | POP4 | 10775 | RNAseq | -0.2109 | 0.4543 | |
| TCGA | POP4 | 10775 | RNAseq | 0.0714 | 0.2065 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by POP4 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of POP4:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | POP4 | 10775 | 6 | 7 | 17 | |
| GSE20123 | POP4 | 10775 | 6 | 6 | 18 | |
| GSE43470 | POP4 | 10775 | 6 | 6 | 31 | |
| GSE46452 | POP4 | 10775 | 47 | 1 | 11 | |
| GSE47630 | POP4 | 10775 | 8 | 6 | 26 | |
| GSE54993 | POP4 | 10775 | 17 | 3 | 50 | |
| GSE54994 | POP4 | 10775 | 7 | 11 | 35 | |
| GSE60625 | POP4 | 10775 | 9 | 0 | 2 | |
| GSE74703 | POP4 | 10775 | 6 | 4 | 26 | |
| GSE74704 | POP4 | 10775 | 5 | 4 | 11 | |
| TCGA | POP4 | 10775 | 17 | 14 | 65 |
Total number of gains: 134; Total number of losses: 62; Total Number of normals: 292.
Somatic mutations of POP4:
Generating mutation plots.
Highly correlated genes for POP4:
Showing top 20/137 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| POP4 | GPANK1 | 0.754179 | 3 | 0 | 3 |
| POP4 | ZNF30 | 0.678319 | 3 | 0 | 3 |
| POP4 | SCYL2 | 0.674847 | 3 | 0 | 3 |
| POP4 | ZNF564 | 0.662282 | 4 | 0 | 3 |
| POP4 | BCLAF1 | 0.644486 | 4 | 0 | 4 |
| POP4 | UQCRFS1 | 0.643002 | 12 | 0 | 9 |
| POP4 | ZNF175 | 0.630358 | 3 | 0 | 3 |
| POP4 | MBOAT1 | 0.623871 | 4 | 0 | 3 |
| POP4 | KCTD20 | 0.623228 | 3 | 0 | 3 |
| POP4 | POLR3B | 0.620815 | 4 | 0 | 3 |
| POP4 | CCDC126 | 0.616406 | 3 | 0 | 3 |
| POP4 | SPCS1 | 0.613971 | 7 | 0 | 5 |
| POP4 | EIF4EBP2 | 0.608141 | 3 | 0 | 3 |
| POP4 | MMGT1 | 0.608093 | 3 | 0 | 3 |
| POP4 | RAF1 | 0.604173 | 4 | 0 | 3 |
| POP4 | PSEN1 | 0.603248 | 5 | 0 | 4 |
| POP4 | C1orf122 | 0.601262 | 4 | 0 | 3 |
| POP4 | TM2D1 | 0.599904 | 4 | 0 | 3 |
| POP4 | MECOM | 0.598874 | 3 | 0 | 3 |
| POP4 | ECHDC1 | 0.598398 | 3 | 0 | 3 |
For details and further investigation, click here
